G-Index

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

G

gamma(double) - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor
gaussianFilter(double[], double) - Static method in class edu.stanford.rsl.conrad.utils.DoubleArrayUtil: Gaussian smoothing of the elements of the array "weights"
gaussianFilter(float[], float) - Static method in class edu.stanford.rsl.conrad.utils.FloatArrayUtil: Gaussian smoothing of the elements of the array "weights"
GaussianFunction - Class in edu.stanford.rsl.conrad.fitting: Implements a Gaussian Function.
GaussianFunction() - Constructor for class edu.stanford.rsl.conrad.fitting.GaussianFunction
GaussianFunction(double, double) - Constructor for class edu.stanford.rsl.conrad.fitting.GaussianFunction
gc() - Static method in class edu.stanford.rsl.conrad.utils.CONRAD
General - Class in edu.stanford.rsl.conrad.geometry: All kinds of geometric routines that are not specific to some geometric object or interact on a set of these.
General() - Constructor for class edu.stanford.rsl.conrad.geometry.General
generateCosineWeights() - Method in class edu.stanford.rsl.conrad.filtering.CosineWeightingTool: Computes the cosine weights as described in Kak & Slaney, Computerized Tomographic Imaging, 1988
generateDefaultScene(double, double) - Method in class edu.stanford.rsl.conrad.geometry.splines.SurfaceBSplineVolumePhantom
generateFloatBuffer(int, int, CLMemory.Mem...) - Method in class edu.stanford.rsl.conrad.opencl.OpenCLRenderer
generateFromMaterialName(String) - Static method in class edu.stanford.rsl.conrad.phantom.xcat.XCatMaterialGenerator: Get the material from its name.
generateFromSplineName(String) - Static method in class edu.stanford.rsl.conrad.phantom.xcat.XCatScene: Lookup Material via the Spline name
generateIntBuffer(int, int, CLMemory.Mem...) - Method in class edu.stanford.rsl.conrad.opencl.OpenCLRenderer
generateLP(double) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.GeometryTests
generateLP(double) - Static method in class edu.stanford.rsl.conrad.phantom.CatphanCTP528
generateSamplingPoints() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLProjectionPhantomRenderer
generateSamplingPoints(float, int, int) - Method in class edu.stanford.rsl.conrad.opencl.TestOpenCL
generateSamplingPoints(int, int, int) - Method in class edu.stanford.rsl.conrad.opencl.TestOpenCL
generateSamplingPoints(int, int) - Method in class edu.stanford.rsl.conrad.opencl.TestOpenCL
generateSamplingPoints(int, int) - Method in class edu.stanford.rsl.tutorial.motionEstimation.OpenCLSplineRenderer
generateSamplingPoints(float, int, int) - Method in class edu.stanford.rsl.tutorial.motionEstimation.OpenCLSplineRenderer
generateScreenBuffer(int, int) - Method in class edu.stanford.rsl.conrad.opencl.TestOpenCL
generateScreenBuffer(int, int) - Method in class edu.stanford.rsl.tutorial.motionEstimation.OpenCLSplineRenderer
generateTimeSamplingPoints(float) - Method in class edu.stanford.rsl.conrad.opencl.OpenCLProjectionPhantomRenderer
generateXRaySpectrum(double[], double, String, double) - Static method in class edu.stanford.rsl.conrad.physics.XRaySpectrum
generateXRaySpectrum(double[], double, String, double, double, double, double, double, double, double) - Static method in class edu.stanford.rsl.conrad.physics.XRaySpectrum
GeometryTests - Class in edu.stanford.rsl.conrad.geometry.shapes.simple
GeometryTests() - Constructor for class edu.stanford.rsl.conrad.geometry.shapes.simple.GeometryTests
GeometryTests - Class in edu.stanford.rsl.conrad.geometry.test
GeometryTests() - Constructor for class edu.stanford.rsl.conrad.geometry.test.GeometryTests
get() - Method in class edu.stanford.rsl.conrad.data.iterators.PointwiseIterator
get() - Method in class edu.stanford.rsl.conrad.data.iterators.PointwiseIterator1D
get() - Method in class edu.stanford.rsl.conrad.data.iterators.PointwiseIterator2D
get() - Method in class edu.stanford.rsl.conrad.data.iterators.PointwiseIterator3D
get(int) - Method in class edu.stanford.rsl.conrad.geometry.shapes.compound.CompoundShape
get(int) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.PointND: Method to retrieve coordinate entries
get(int, int) - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor
get(int) - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor
get(String) - Static method in class edu.stanford.rsl.conrad.physics.materials.database.ElementalMassAttenuationData: Retrieve mass attenuation data of given element
get(int) - Method in class edu.stanford.rsl.conrad.utils.ImageProcessorBuffer: Returns the ImageProcessor at index index.
get4DSpline() - Static method in class edu.stanford.rsl.conrad.geometry.motion.MotionUtil
getA() - Method in class edu.stanford.rsl.conrad.fitting.LogarithmicFunction
getA() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Triangle: Returns point a
getA() - Method in class edu.stanford.rsl.tutorial.motionEstimation.OpenCLCompensatedBackProjectorTPS
getAbsorptionEdges(WeightedAtomicComposition) - Static method in class edu.stanford.rsl.conrad.physics.materials.database.CompositionToAbsorptionEdgeMap: Retrieve a set of unique absorption edges given an atomic composition
getAbsorptionEdges() - Method in class edu.stanford.rsl.conrad.physics.materials.Material: Retrieve all the absorption edges of material in MeV.
getAbstractVector() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.PointND: Returns the internal abstract vector to enable computations via the numerics library.
Changes to the vector will affect the point
getAcc() - Method in class edu.stanford.rsl.conrad.geometry.motion.timewarp.SigmoidTimeWarper
getACoeff(int) - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.IRRFilter
getAffineTransformationMatrix() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconAffineTransform
getAllPointSets() - Method in class edu.stanford.rsl.apps.gui.pointselector.PointSelectorWorker
getAlpha() - Method in class edu.stanford.rsl.conrad.filtering.FastRadialSymmetryTool
getAnalyticPhantoms() - Static method in class edu.stanford.rsl.conrad.phantom.AnalyticPhantom
getAngle() - Method in class edu.stanford.rsl.conrad.data.Complex
getAppendBufferRenderInstance() - Static method in class edu.stanford.rsl.conrad.opencl.OpenCLUtil
getArrayAsString(double[]) - Static method in class edu.stanford.rsl.conrad.physics.materials.utils.MaterialUtils: Convert an array of doubles to semi-colon separated values
getAsFloatA() - Method in class edu.stanford.rsl.tutorial.motionEstimation.ThinPlateSplineInterpolation
getAsFloatB() - Method in class edu.stanford.rsl.tutorial.motionEstimation.ThinPlateSplineInterpolation
getAsFloatCoeffs() - Method in class edu.stanford.rsl.tutorial.motionEstimation.ThinPlateSplineInterpolation
getAsFloatPoints() - Method in class edu.stanford.rsl.tutorial.motionEstimation.ThinPlateSplineInterpolation
getAtIndex(int) - Method in class edu.stanford.rsl.conrad.data.Grid1D
getAtIndex(int) - Method in class edu.stanford.rsl.conrad.data.Grid1DComplex
getAtIndex(int, int) - Method in class edu.stanford.rsl.conrad.data.Grid2D
getAtIndex(int, int) - Method in class edu.stanford.rsl.conrad.data.Grid2DComplex: implicitely returns the magnitude of the complex number
getAtIndex(int, int, int) - Method in class edu.stanford.rsl.conrad.data.Grid3D
getAtomicNumber() - Method in class edu.stanford.rsl.conrad.physics.materials.Element: Retrieve the atomic number of the element.
getAtomicWeight() - Method in class edu.stanford.rsl.conrad.physics.materials.Element: Retrieve the atomic weight of the element.
getAttenuation(double, AttenuationType) - Method in class edu.stanford.rsl.conrad.physics.materials.Material: Retrieve the energy dependent attenuation of material
getAttenuation(double, AttenuationType, AttenuationRetrievalMode) - Method in class edu.stanford.rsl.conrad.physics.materials.Material: Retrieve the energy dependent attenuation of material.
getAutomaticExposureControlConfigFile() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getAvailableFunctions() - Static method in class edu.stanford.rsl.conrad.fitting.Function
getAvailableImagePlus() - Static method in class edu.stanford.rsl.conrad.utils.ImageUtil
getAvailableImagePlusAsArray() - Static method in class edu.stanford.rsl.conrad.utils.ImageUtil
getAvailableRamps() - Static method in class edu.stanford.rsl.conrad.filtering.rampfilters.RampFilter
getAvailableSliceWorkers() - Static method in class edu.stanford.rsl.conrad.phantom.renderer.MetricPhantomRenderer: Reports a list of all known subclasses of SliceWorker for physical phantoms
getAvailableSliceWorkers() - Static method in class edu.stanford.rsl.conrad.phantom.renderer.ParallelProjectionPhantomRenderer: Reports a list of all known subclasses of SliceWorker
getAvailableSliceWorkers() - Static method in class edu.stanford.rsl.conrad.phantom.workers.SliceWorker: Reports a list of all known subclasses of SliceWorker
getAvailableSurfaces() - Static method in class edu.stanford.rsl.conrad.fitting.Surface
getAvailableWorkersAsString() - Static method in class edu.stanford.rsl.conrad.phantom.renderer.MetricPhantomRenderer: Gives a list of the available Workers as String []
getAvailableWorkersAsString() - Static method in class edu.stanford.rsl.conrad.phantom.workers.SliceWorker: Gives a list of the available Workers as String []
getAverageAngularIncrement() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getAxis(int) - Method in class edu.stanford.rsl.conrad.geometry.CoordinateSystem
getAxisVector() - Method in class edu.stanford.rsl.conrad.geometry.Axis
getB() - Method in class edu.stanford.rsl.conrad.fitting.LogarithmicFunction
getB() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Triangle: Returns point b
getB() - Method in class edu.stanford.rsl.conrad.volume3d.operations.InitializeSquaredCosineR
getB() - Method in class edu.stanford.rsl.tutorial.motionEstimation.OpenCLCompensatedBackProjectorTPS
getBackgroundMaterial() - Method in class edu.stanford.rsl.conrad.rendering.AbstractScene
getBackgroundValue() - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor: Always returns 0.
getBaseFunction() - Method in class edu.stanford.rsl.conrad.fitting.RANSACFittedFunction
getBaseShape(String) - Static method in class edu.stanford.rsl.conrad.phantom.forbild.ForbildShapeFactory
getBCoeff(int) - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.IRRFilter
getBeadMeanPosition3D() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getBeadPointsROI() - Method in class edu.stanford.rsl.tutorial.phantoms.MTFphantom
getBeadPosition2D() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getBeadPositionIn2D() - Method in class edu.stanford.rsl.conrad.geometry.motion.WeightBearingBeadPositionBuilder
getBeamHardeningLookupTable(double, double, double, double[], double[], LinearInterpolatingDoubleArray, LinearInterpolatingDoubleArray) - Static method in class edu.stanford.rsl.conrad.physics.EnergyDependentCoefficients: Deprecated.

Generates a BilinearInterpolatingDoubleArray which can be used to look up lambda values.
getBeamHardeningLookupTable(double[], double[], double[], double[], LinearInterpolatingDoubleArray, LinearInterpolatingDoubleArray) - Static method in class edu.stanford.rsl.conrad.physics.EnergyDependentCoefficients: Deprecated.

Generates a BilinearInterpolatingDoubleArray which can be used to look up lambda values.
getBeamHardeningLookupTable() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getBeginIndexX() - Method in class edu.stanford.rsl.conrad.volume3d.operations.ParallelVolumeOperation
getBestDevice() - Static method in class edu.stanford.rsl.conrad.cuda.CUDAUtil
getBibtexCitation() - Method in interface edu.stanford.rsl.apps.gui.Citeable: Returns the citation in bibTex format
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.cuda.CUDABackProjector
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.cuda.CUDACompensatedBackProjector
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.cuda.CUDAForwardProjector: Returns a reference to literature describing this algorithm in Bibtex format
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.cuda.CUDAForwardProjectorWithMotion: Returns a reference to literature describing this algorithm in Bibtex format
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.AbsoluteValueTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.ApplyHounsfieldScaling
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.ApplyLambdaWeightingTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.AtractResidual2D
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.BilateralFilteringTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.CosineWeightingTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.DynamicDensityOptimizationScatterCorrectionTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.ExtremeValueTruncationFilter
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.FastRadialSymmetryTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.FiducialMarkerDetectionTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.Filtering2DTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.HilbertFilteringTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.HorizontalFlippingTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.HoughFilteringTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.ImageConstantMathFilter
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.ImageJParallelTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.ImageMathFilter
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.KinectBasedDetectorSaturationCorrectionTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.LaplaceFilteringTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.LogPoissonNoiseFilteringTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.MeanFilteringTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.MeanMarkerBasedProjectionShiftingTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.MeanMarkerBasedProjectionShiftingToolForXCAT
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.MedianFilteringTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.AnisotropicStructureTensorNoiseFilter
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.BilateralFilter3D
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.BlockWiseStructureTensor
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.DiaphragmTrackingTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.IdentityTransformFilter
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.IterativeReconstructionFilter
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.Lambda3DDerivativeFilter
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.ProjectionSortingFilter
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.Triangulation
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.NonLinearGainCorrectionTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.NumericalDerivativeComputationTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.NumericalLinewiseAntiderivativeFilteringTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.PoissonNoiseFilteringTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.PrimaryModulationScatterCorrectionTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.RampFilteringTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.NooWeightingTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.OSCARWeightingTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.ParkerWeightingTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.SilverWeightingTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.WesargWeightingTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.Rotate90DegreeLeftTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.ThinPlateSplinesBasedProjectionWarpingTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.ThinPlateSplinesBasedProjectionWarpingToolForXCAT
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.TruncationCorrectionTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.filtering.VolumeAttenuationFactorCorrectionTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.geometry.splines.SurfaceBSplineVolumePhantom
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.io.ImagePlusDataSink
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.io.IndividualFilesProjectionDataSink
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.metric.MeanSquareErrorMetric
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.metric.NormalizedImprovement
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLBackProjector
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLForwardProjector: Returns a reference to literature describing this algorithm in Bibtex format
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLForwardProjectorWithMotion: Returns a reference to literature describing this algorithm in Bibtex format
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLProjectionPhantomRenderer
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.phantom.BeadRemovalPhantom
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.phantom.BoxPhantom
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.phantom.CatheterPhantom
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.phantom.CatphanCTP528
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.phantom.DefrisePhantom
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.phantom.electrondensity.CrisEDPhantomM062
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.phantom.forbild.ForbildPhantom
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.phantom.MovingBallPhantom
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.phantom.MTFBeadPhantom
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.phantom.renderer.AnalyticPhantomProjector
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.phantom.renderer.CylinderPhantomRenderer
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.phantom.renderer.RampProjectionPhantomRenderer
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.phantom.renderer.SliceParallelVolumePhantomRenderer
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.phantom.SevenBeadPhantom
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.phantom.SheppLoganPhantom
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.phantom.SpherePhantom
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.phantom.WaterCylinderPhantom
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.phantom.workers.AnalyticPhantom3DVolumeRenderer
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.phantom.workers.AnalyticPhantomProjectorWorker
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.phantom.workers.DiracProjectionPhantom
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.phantom.workers.SheppLoganPhantomWorker
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.phantom.workers.VolumeOfInterestPhantom
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.phantom.xcat.CoronaryScene
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.phantom.xcat.HeartScene
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.phantom.xcat.WholeBodyScene
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.pipeline.DevNullSink
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.pipeline.IndividualImagePipelineFilteringTool
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.CPUSuperShortScanBackprojector
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.DistanceDrivenBasedReconstruction
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.DistanceDrivenBasedReconstruction
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.RayDrivenBasedReconstruction
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.SeparableFootprintsBasedReconstruction
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.MotionCompensatedSubVolumeBackprojector
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.MotionCompensatedVOIBasedReconstructionFilter
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.RayDrivenBasedReconstruction
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.RayWeightCorrectingCPUSuperShortScanBackprojector
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.RigidBody3DTransformationVOIBasedReconstructionFilter
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.RigidBody3DTransformationVOIBasedReconstructionFilterForXCAT
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.SeparableFootprintsBasedReconstruction
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.SimpleIterativeReconstruction
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.SubVolumeBackprojector
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.SuperShortScanBackprojection: Deprecated.
getBibtexCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.VOIBasedReconstructionFilter
getBibtexCitation() - Method in class edu.stanford.rsl.tutorial.motionEstimation.OpenCLCompensatedBackProjector
getBibtexCitation() - Method in class edu.stanford.rsl.tutorial.motionEstimation.OpenCLCompensatedBackProjector1DCompressionField
getBibtexCitation() - Method in class edu.stanford.rsl.tutorial.motionEstimation.OpenCLCompensatedBackProjectorTPS
getBibtexCitation() - Method in class edu.stanford.rsl.tutorial.truncation.ConstantValueZeroArtifactImage
getBibtexCitation() - Method in class edu.stanford.rsl.tutorial.truncation.NonZeroArtifactImage
getBicubicInterpolatedPixel(double, double, SerializableFloatProcessor) - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor: This method is from Chapter 16 of "Digital Image Processing: An Algorithmic Introduction Using Java" by Burger and Burge (http://www.imagingbook.com/).
getBilinearInterpolationDataMotion(double) - Method in class edu.stanford.rsl.conrad.io.MotionFieldReader
getBilinearInterpolationDataPosition(double) - Method in class edu.stanford.rsl.conrad.io.MotionFieldReader
getBinaryMask() - Method in class edu.stanford.rsl.tutorial.fan.redundancy.BinaryWeights
getBinaryMask() - Method in class edu.stanford.rsl.tutorial.fan.redundancy.BinaryWeights_erodeByOne
getBinaryMask() - Method in class edu.stanford.rsl.tutorial.fan.redundancy.BinaryWeights_Normal
getBinaryParticle(int, ImagePlus, int[][], int[][], int) - Static method in class edu.stanford.rsl.apps.gui.blobdetection.ConnectedComponent3D: create a binary ImagePlus containing a single particle and which 'just fits' the particle
getBinaryRepresentation() - Method in class edu.stanford.rsl.conrad.geometry.splines.BSpline: Rewrites the BSpline into a float representation:
getBinaryRepresentation() - Method in class edu.stanford.rsl.conrad.geometry.splines.SurfaceBSpline: Binary Representation of a Surface BSpline:
getBinaryRepresentation() - Method in class edu.stanford.rsl.conrad.geometry.splines.TimeVariantSurfaceBSpline: Returns a binary representation of a time variant surface spline:
getBinaryRepresentation() - Method in class edu.stanford.rsl.conrad.phantom.xcat.CoronaryScene
getBinaryRepresentation() - Method in class edu.stanford.rsl.conrad.phantom.xcat.HeartScene
getBinaryRepresentation() - Method in class edu.stanford.rsl.conrad.phantom.xcat.WholeBodyScene
getBinaryRepresentation() - Method in class edu.stanford.rsl.conrad.phantom.xcat.XCatScene: Returns the scene as an collection of Bsplines:
getBorder() - Method in class edu.stanford.rsl.apps.gui.GUICompatibleObjectVisualizationPanel
getBoundingSurface() - Method in class edu.stanford.rsl.conrad.geometry.bounds.AbstractBoundingCondition
getBoundingSurface() - Method in class edu.stanford.rsl.conrad.geometry.bounds.BoundingBox
getBoundingSurface() - Method in class edu.stanford.rsl.conrad.geometry.bounds.HalfSpaceBoundingCondition
getBoundingSurface() - Method in class edu.stanford.rsl.conrad.geometry.bounds.QuadricBoundingCondition
getBounds() - Method in class edu.stanford.rsl.conrad.geometry.splines.SurfaceBSplineVolumePhantom: Returns an SimpleVector that specifies the bounding box of the BSpline Phantom with six entries:
Minimum X Coordinate Minimum Y Coordinate Minimum Z Coordinate Maximum X Coordinate Maximum Y Coordinate Maximum Z Coordinate
getBreathing() - Method in class edu.stanford.rsl.conrad.phantom.xcat.CombinedBreathingHeartScene
getBreathingHeartScene() - Method in class edu.stanford.rsl.conrad.geometry.motion.CombinedBreathingHeartMotionField
getBuffer() - Method in class edu.stanford.rsl.conrad.data.Grid1D: EXPLYCITELY copies the elements and returns the copied float array! Thus, writing on the returned array does not mean writing onto the Grid1D buffer! * @return
getBuffer() - Method in class edu.stanford.rsl.conrad.data.Grid2D: Returns a reference to the linear buffer containing the 2D image in a row-first manner.
getBuffer() - Method in class edu.stanford.rsl.conrad.data.Grid3D
getBufferedImage() - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor: Returns this image as an 8-bit BufferedImage.
getBufferMaterial() - Method in class edu.stanford.rsl.conrad.phantom.electrondensity.Insert: Gets the material of the buffer.
getBufferState() - Method in class edu.stanford.rsl.conrad.phantom.electrondensity.Insert
getC() - Method in class edu.stanford.rsl.conrad.fitting.LogarithmicFunction
getC() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Triangle: Returns point c
getCenter() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Sphere
getCentroids(ImagePlus, int[][], long[]) - Method in class edu.stanford.rsl.apps.gui.blobdetection.ConnectedComponent3D: Get the centroids of all the particles in real units
getChangeOfAxisMatrix(Axis) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.SimpleSurface: Calculates matrix for rotating shape from a principal axis to new axis.
getChunkRanges(ImagePlus, int, int) - Method in class edu.stanford.rsl.apps.gui.blobdetection.ConnectedComponent3D: Get a 2 d array that defines the z-slices to scan within while connecting particles within chunkified stacks.
getCitationFormat() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getCoeff() - Method in class edu.stanford.rsl.tutorial.motionEstimation.OpenCLCompensatedBackProjectorTPS
getCol(int) - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix: Retrieve column from index col of matrix
getColNoLKneeAngleX() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
getColNoRKneeAngleX() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
getCols() - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix
getCompositionTable() - Method in class edu.stanford.rsl.conrad.physics.materials.utils.WeightedAtomicComposition: Retrieve a composition table describing the elemental make up of material of interest
getCompositionTable() - Method in class edu.stanford.rsl.conrad.physics.materials.WeightedAtomicComposition
getCompoundMotion(int, ArrayList<ArrayList<PointND>>, int) - Method in class edu.stanford.rsl.conrad.phantom.xcat.WholeBodyScene: Creates a motion field from a sequence of points in time.
getConfig() - Method in class edu.stanford.rsl.conrad.utils.DicomConfigurationUpdater
getConfiguration() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.SystemGeometryConfigFileTrajectory
getConfiguration() - Method in interface edu.stanford.rsl.conrad.utils.ConfigurationUpdater
getConfiguration() - Method in class edu.stanford.rsl.conrad.utils.DicomConfigurationUpdater
getConjugate() - Method in class edu.stanford.rsl.conrad.data.Complex
getContext() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.MultiProjectionFilter
getControlPoint(int) - Method in class edu.stanford.rsl.conrad.geometry.splines.BSpline: Returns the i-th control point
getControlPoints() - Method in class edu.stanford.rsl.conrad.geometry.splines.BSpline
getControlPoints() - Method in class edu.stanford.rsl.conrad.geometry.splines.SurfaceBSpline
getControlPoints(int) - Method in class edu.stanford.rsl.conrad.geometry.splines.TimeVariantSurfaceBSpline
getCoordinates() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.PointND: Returns a copy of the point as double array.
getCorrectionFactor() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getCosineWeights() - Method in class edu.stanford.rsl.conrad.filtering.CosineWeightingTool
getCTNumber(EnergyDependentCoefficients.Material) - Static method in class edu.stanford.rsl.conrad.physics.EnergyDependentCoefficients: Deprecated.

Returns the CT number of the material in [g/cm^3]
getCTValue() - Method in class edu.stanford.rsl.conrad.physics.materials.Material: Retrieve the CT value of a given material in [HU]
getCurrent() - Method in class edu.stanford.rsl.conrad.utils.Configuration: Returns the current in [mA]
getCurrent() - Method in class edu.stanford.rsl.conrad.utils.DicomDecoder
getCurrentPath() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getCurrentProjectionNumber() - Method in class edu.stanford.rsl.conrad.io.FileProjectionSource
getCurrentProjectionNumber() - Method in class edu.stanford.rsl.conrad.phantom.renderer.PhantomRenderer
getCurrentProjectionNumber() - Method in class edu.stanford.rsl.conrad.pipeline.ParallelImageFilterSink
getCurrentProjectionNumber() - Method in interface edu.stanford.rsl.conrad.pipeline.ProjectionSource: Returns the current projection number
getCurrentRowWeights() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getCutOffFrequency() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.RampFilter
getCutOffFrequency() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getD() - Method in class edu.stanford.rsl.conrad.fitting.LogarithmicFunction
getData() - Method in class edu.stanford.rsl.conrad.geometry.transforms.ComboTransform
getData() - Method in class edu.stanford.rsl.conrad.geometry.transforms.ScaleRotate
getData() - Method in class edu.stanford.rsl.conrad.geometry.transforms.Transform
getData() - Method in class edu.stanford.rsl.conrad.geometry.transforms.Translation
getData(float[][][]) - Method in class edu.stanford.rsl.conrad.volume3d.MaxEigenValue
getDatabaseLocation() - Static method in class edu.stanford.rsl.conrad.physics.materials.database.MaterialsDB: Absolute file path of database
getdCU() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getdCU() - Method in class edu.stanford.rsl.conrad.utils.DicomDecoder
getDefaultColorModel() - Static method in class edu.stanford.rsl.conrad.utils.ImageUtil
getDegree() - Method in class edu.stanford.rsl.conrad.fitting.PolynomialFunction
getDegree() - Method in class edu.stanford.rsl.conrad.fitting.Quadric
getDegree() - Method in class edu.stanford.rsl.conrad.geometry.splines.BSpline: Returns the degree of the spline.
getDensity() - Method in class edu.stanford.rsl.conrad.physics.materials.Material: Retrieves the density of the material in [g/cm^3]
getDescription() - Method in class edu.stanford.rsl.conrad.utils.StringFileFilter
getDetectorHeight() - Method in class edu.stanford.rsl.conrad.filtering.CosineWeightingTool
getDetectorHeight() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getDetectorOffsetU() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getDetectorOffsetV() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getDetectorUDirection() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getDetectorVDirection() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getDetectorWidth() - Method in class edu.stanford.rsl.conrad.filtering.CosineWeightingTool
getDetectorWidth() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.ParkerWeightingTool
getDetectorWidth() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getDevicePointer() - Method in class edu.stanford.rsl.conrad.cuda.CUDAVolume3D
getDeviceSerialNumber() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getDeviceX() - Method in class edu.stanford.rsl.conrad.cuda.splines.CUDABSpline
getDiag() - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix
getDiaphragmCoords() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getDiaphragmCoordsEntry(int) - Method in class edu.stanford.rsl.conrad.utils.Configuration
getDiaphragmMax() - Method in class edu.stanford.rsl.conrad.phantom.xcat.BreathingScene
getDiaphragmMin() - Method in class edu.stanford.rsl.conrad.phantom.xcat.BreathingScene
getDiaphragmModelEntry(int) - Method in class edu.stanford.rsl.conrad.utils.Configuration
getDiaphragmModelField() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getDiaphragmMotionVector(double, double) - Method in class edu.stanford.rsl.conrad.phantom.xcat.BreathingScene: Returns the Motion Vector of the top of the diaphragm from initialTime to time
getDiaphragmMotionVector_old(double, double) - Method in class edu.stanford.rsl.conrad.phantom.xcat.BreathingScene
getDiaphragmMovement() - Method in class edu.stanford.rsl.conrad.phantom.xcat.BreathingScene
getDiaphragmPositionField() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getDiaphragmPositionFieldEntry(int) - Method in class edu.stanford.rsl.conrad.utils.Configuration
getDimension() - Method in class edu.stanford.rsl.conrad.geometry.AbstractShape: Returns the external dimension of the shape.
getDimension() - Method in class edu.stanford.rsl.conrad.geometry.shapes.ArbitrarySurface
getDimension() - Method in class edu.stanford.rsl.conrad.geometry.shapes.compound.CompoundShape
getDimension() - Method in class edu.stanford.rsl.conrad.geometry.shapes.compound.LinearOctree
getDimension() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Box
getDimension() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Cone
getDimension() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Cylinder
getDimension() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Plane3D
getDimension() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.PointND: Returns the dimension of the point
getDimension() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.QuadricSurface
getDimension() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.StraightLine
getDimension() - Method in class edu.stanford.rsl.conrad.geometry.splines.BSpline
getDimension() - Method in class edu.stanford.rsl.conrad.geometry.splines.SurfaceBSpline
getDimension() - Method in class edu.stanford.rsl.conrad.geometry.splines.TimeVariantSurfaceBSpline
getDimx() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.AnisotropicStructureTensorNoiseFilter
getDimy() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.AnisotropicStructureTensorNoiseFilter
getDirection() - Method in class edu.stanford.rsl.conrad.data.iterators.FloatIterator
getDirection() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.StraightLine
getDirection() - Method in class edu.stanford.rsl.conrad.volume3d.operations.InitializeSquaredCosine
getDirection() - Method in class edu.stanford.rsl.conrad.volume3d.operations.InitializeSquaredCosineR
getDirectory() - Method in class edu.stanford.rsl.conrad.io.IndividualFilesProjectionDataSink
getDose() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getDose() - Method in class edu.stanford.rsl.conrad.utils.DicomDecoder
getEigens(ImagePlus, int[][], double[][]) - Method in class edu.stanford.rsl.apps.gui.blobdetection.ConnectedComponent3D
getElectroCardioGramm() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getElement(int, int) - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix: Retrieve matrix entry in the specified row and column
getElement(int) - Method in class edu.stanford.rsl.conrad.numerics.SimpleVector: Retrieve vector element at index i
getEllipsoids(ArrayList<List<Point3D>>) - Method in class edu.stanford.rsl.apps.gui.blobdetection.ConnectedComponent3D
getEncoding(FileInfo) - Static method in class edu.stanford.rsl.conrad.io.Nrrd_Writer
getEnd() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Edge
getEndIndexX() - Method in class edu.stanford.rsl.conrad.volume3d.operations.ParallelVolumeOperation
getEpsilon() - Method in class edu.stanford.rsl.conrad.fitting.RANSACFittedFunction
getExperiment() - Method in class edu.stanford.rsl.apps.gui.ExperimentPanel
getExponent() - Method in class edu.stanford.rsl.conrad.volume3d.operations.InitializeSquaredCosine
getExponent() - Method in class edu.stanford.rsl.conrad.volume3d.operations.InitializeSquaredCosineR
getf(int, int) - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor
getf(int) - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor
getfAccessed() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getFaces() - Method in class edu.stanford.rsl.conrad.geometry.ConvexHull: Returns the hull as an array of triangles
getfDelta() - Method in class edu.stanford.rsl.conrad.volume3d.operations.InitializeGaussian
getfDelta() - Method in class edu.stanford.rsl.conrad.volume3d.operations.InitializeHighPass
getfDelta() - Method in class edu.stanford.rsl.conrad.volume3d.operations.InitializeLowPass
getfDelta() - Method in class edu.stanford.rsl.conrad.volume3d.operations.InitializeSquaredCosine
getfDelta() - Method in class edu.stanford.rsl.conrad.volume3d.operations.InitializeSquaredCosineR
getFerets(ArrayList<List<Point3D>>) - Method in class edu.stanford.rsl.apps.gui.blobdetection.ConnectedComponent3D: Get the Feret diameter of a surface.
getFileInfo() - Method in class edu.stanford.rsl.apps.gui.RawDataOpener
getFileInfo() - Method in class edu.stanford.rsl.conrad.utils.DicomDecoder
getFilename() - Method in class edu.stanford.rsl.apps.gui.blobdetection.MarkerDetectionWorker
getFilename() - Method in class edu.stanford.rsl.conrad.utils.DicomConfigurationUpdater
getFilter() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.ArbitraryRampFilter
getFilter2D() - Method in class edu.stanford.rsl.conrad.filtering.Filtering2DTool
getFilteredImage() - Method in class edu.stanford.rsl.conrad.filtering.IndividualImageFilteringTool: returns the filtered ImageProcessor if the filtering was successful.
getFilterPipeline() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getFilterTools() - Static method in class edu.stanford.rsl.conrad.filtering.ImageFilteringTool: Gives an Array with default instances of all known image filters.
getFilterType() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.IRRFilter
getFilterType() - Method in class edu.stanford.rsl.conrad.volume3d.operations.InitializeSquaredCosine
getFilterType() - Method in class edu.stanford.rsl.conrad.volume3d.operations.InitializeSquaredCosineR
getFilterWeight(double) - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.ArbitraryRampFilter
getFilterWeight(double) - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.CosineRampFilter
getFilterWeight(double) - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.HammingRampFilter
getFilterWeight(double) - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.HanningRampFilter
getFilterWeight(double) - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.RamLakRampFilter
getFilterWeight(double) - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.RampFilter
getFilterWeight(double) - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.SheppLoganRampFilter
getfMax() - Method in class edu.stanford.rsl.conrad.volume3d.operations.InitializeGaussian
getfMax() - Method in class edu.stanford.rsl.conrad.volume3d.operations.InitializeHighPass
getfMax() - Method in class edu.stanford.rsl.conrad.volume3d.operations.InitializeLowPass
getfMax() - Method in class edu.stanford.rsl.conrad.volume3d.operations.InitializeSquaredCosine
getfMax() - Method in class edu.stanford.rsl.conrad.volume3d.operations.InitializeSquaredCosineR
getFormat() - Method in class edu.stanford.rsl.conrad.io.IndividualFilesProjectionDataSink
getFormula() - Method in class edu.stanford.rsl.conrad.physics.materials.Compound
getFormula(String) - Static method in class edu.stanford.rsl.conrad.physics.materials.database.NameToFormulaMap: Retrieves the material formula corresponding to the given name
getFreeMemoryAsDouble() - Static method in class edu.stanford.rsl.conrad.utils.CONRAD: Returns the total free memory as double between 1.0 and 0.0.
getFreq1() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.IRRFilter
getFreq2() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.IRRFilter
getFreqPoints() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.IRRFilter
getFrequencyBoundings(int, int[], float[], float[], float[]) - Static method in class edu.stanford.rsl.conrad.volume3d.VolumeOperator: Computes the maximal frequency for each dimension as $%preamble{\usepackage{amsmath}} $f_\text{max} = \frac{\pi}{s_i}$$ , where is the size of each voxel in dimension and the size of each frequency bin $%preamble{\usepackage{amsmath}} $f_{\delta} = \frac{2 \cdot f_\text{max}}{l_i}$$ , where is the number of voxels in dimension .
Method currently applies C-style passing of return values.
getGaincutfactor() - Method in class edu.stanford.rsl.conrad.filtering.PrimaryModulationScatterCorrectionTool
getGeometricCenter(ArrayList<PointND>) - Static method in class edu.stanford.rsl.conrad.geometry.General: Compute the geometric center of a set of points
getGeometricCenter(Iterator<PointND>) - Static method in class edu.stanford.rsl.conrad.geometry.General: Compute the geometric center of an iterator of points
getGeometricCenter(PointND[]) - Static method in class edu.stanford.rsl.conrad.geometry.General
getGeometricCenter(ArrayList<PointND>) - Static method in class edu.stanford.rsl.conrad.utils.DoublePrecisionPointUtil: Compute the geometric center of a set of points
getGeometry() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.ModelBasedIterativeReconstruction
getGeometry() - Method in class edu.stanford.rsl.conrad.reconstruction.ModelBasedIterativeReconstruction
getGeometry() - Method in class edu.stanford.rsl.conrad.reconstruction.ReconstructionFilter
getGeometry() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getGeometrySources(Trajectory) - Static method in class edu.stanford.rsl.conrad.geometry.trajectories.ConfigFileBasedTrajectory
getGlobalCompensationLinearMinMax(double, double, double) - Method in class edu.stanford.rsl.conrad.io.MotionFieldReader: This method assumes a linear decrease from diaPos to maxPos
getGlobalCompensationLinearScaling() - Method in class edu.stanford.rsl.conrad.io.MotionFieldReader: Method to compute slope.
getGlobalCompensationLinearScalingSimple() - Method in class edu.stanford.rsl.conrad.io.MotionFieldReader: Method to compute simple slope, based on maximum measured diaphragm motion and the point furthest on top
getGlobalConfiguration() - Static method in class edu.stanford.rsl.conrad.utils.Configuration
getHeaderInfo(String) - Method in class edu.stanford.rsl.conrad.io.DennerleinProjectionSource: Reads the header information from the file into a fileinfo object
getHeaderInfo(String, String) - Method in class edu.stanford.rsl.conrad.io.Nrrd_Reader
getHeaderInfo(String) - Method in class edu.stanford.rsl.conrad.io.NRRDProjectionSource
getHeaderInfo(String) - Method in class edu.stanford.rsl.conrad.io.SEQProjectionSource: Reads the header information from the file into a fileinfo object
getHeart() - Method in class edu.stanford.rsl.conrad.phantom.xcat.CombinedBreathingHeartScene
getHeartPhases() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getHeartTranslation() - Method in class edu.stanford.rsl.conrad.phantom.xcat.CombinedBreathingHeartScene
getHeight() - Method in class edu.stanford.rsl.conrad.data.Grid2D: Gets the grid's height
getHeight() - Method in class edu.stanford.rsl.conrad.io.IndividualFilesProjectionDataSink
getHeight() - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor
getHeight() - Method in class edu.stanford.rsl.conrad.phantom.renderer.RampProjectionPhantomRenderer
getHeightInPixels() - Method in class edu.stanford.rsl.conrad.rendering.RayDetector
getHighestPriority() - Method in class edu.stanford.rsl.conrad.rendering.PrioritizableScene
getHighHyst() - Static method in class edu.stanford.rsl.conrad.filtering.multiprojection.DiaphragmTrackingTool
getHighHyst() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getHighPassLowerLevel() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.AnisotropicStructureTensorNoiseFilter
getHighPassUpperLevel() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.AnisotropicStructureTensorNoiseFilter
getHistogram() - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor: Not implemented.
getHits(AbstractCurve) - Method in class edu.stanford.rsl.conrad.geometry.shapes.ArbitrarySurface
getHits(AbstractCurve) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Box
getHits(AbstractCurve) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Cylinder
getHits(AbstractCurve) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.QuadricSurface
getHits(AbstractCurve) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.SimpleSurface
getHitsOnBoundingBox(AbstractCurve) - Method in class edu.stanford.rsl.conrad.geometry.AbstractShape
getHitsOnBoundingBox(AbstractCurve) - Method in class edu.stanford.rsl.conrad.geometry.shapes.compound.CompoundShape
getHitsOnBoundingBox(AbstractCurve) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.QuadricSurface
getHitsOnBoundingBox(AbstractCurve) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Triangle
getHitsOnBoundingBox_slow(AbstractCurve) - Method in class edu.stanford.rsl.conrad.geometry.AbstractShape: Evaluates the bounding box and returns true if it is hit.
getHomogeneousRotationMatrixZ(double) - Static method in class edu.stanford.rsl.conrad.geometry.trajectories.ExtrapolatedTrajectory: Computes a rotation matrix around z axis in homogeneous coordinates.
getHounsfieldScaling() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getHpLower() - Method in class edu.stanford.rsl.conrad.volume3d.operations.InitializeHighPass
getHpUpper() - Method in class edu.stanford.rsl.conrad.volume3d.operations.InitializeHighPass
getHullPoints() - Method in class edu.stanford.rsl.conrad.geometry.ConvexHull: returns the hull as an array of Points
getID(String) - Static method in class edu.stanford.rsl.conrad.geometry.splines.BSpline
getImag() - Method in class edu.stanford.rsl.conrad.data.Complex
getImagAtIndex(int) - Method in class edu.stanford.rsl.conrad.data.Grid1DComplex
getImagAtIndex(int, int) - Method in class edu.stanford.rsl.conrad.data.Grid2DComplex
getImage() - Method in class edu.stanford.rsl.apps.gui.roi.EvaluateROI
getImageIndex() - Method in class edu.stanford.rsl.conrad.filtering.IndividualImageFilteringTool: Returns the index of the current image in the ImageStack.
getImageIndexInSingleSweepGeometry(int) - Static method in class edu.stanford.rsl.conrad.geometry.trajectories.MultiSweepTrajectory
getImagePlus(String) - Method in class edu.stanford.rsl.conrad.volume3d.Volume3D: Creates an ImagePlus to visualize the contents of this Volume.
getImagePlus(String, int, int, boolean) - Method in class edu.stanford.rsl.conrad.volume3d.Volume3D: Method to create an ImagePlus from this Volume3D.
getImagePlusFromRampFilter(int) - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.RampFilter: Creates an ImagePlus to display the filter
getImagePlusFromString(String, ImagePlus[]) - Static method in class edu.stanford.rsl.conrad.utils.ImageUtil: Returns the matching image given it's String representation
getImageProcessorBufferValue() - Method in class edu.stanford.rsl.conrad.phantom.workers.SliceWorker
getImagSubGrid(int, int) - Method in class edu.stanford.rsl.conrad.data.Grid1DComplex
getImagSubGrid(int, int, int, int) - Method in class edu.stanford.rsl.conrad.data.Grid2DComplex
getImportFromDicomAutomatically() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getIncidentRays() - Method in class edu.stanford.rsl.conrad.rendering.RayDetector: Ordered Collection of rays incident on ray detector
getInputBlock() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.blocks.ImageProcessingBlock
getInputSpectrum() - Method in class edu.stanford.rsl.conrad.physics.absorption.PolychromaticAbsorptionModel: Retrieve the current input X-Ray spectrum used by the absorption model
getInputStream() - Method in class edu.stanford.rsl.conrad.utils.DicomDecoder
getInsertBufferState(int, int) - Method in class edu.stanford.rsl.conrad.phantom.electrondensity.CrisEDPhantomM062
getInsertValue(int, int) - Method in class edu.stanford.rsl.conrad.phantom.electrondensity.CrisEDPhantomM062
getIntensifierSize() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getIntensity(double) - Method in class edu.stanford.rsl.conrad.physics.PolychromaticXRaySpectrum: Intensity of XRay at given energy (kev)
getInternalDimension() - Method in class edu.stanford.rsl.conrad.geometry.AbstractCurve
getInternalDimension() - Method in class edu.stanford.rsl.conrad.geometry.AbstractShape: returns the internal dimension of the shape, i.e.
getInternalDimension() - Method in class edu.stanford.rsl.conrad.geometry.AbstractSurface
getInternalDimension() - Method in class edu.stanford.rsl.conrad.geometry.shapes.ArbitrarySurface
getInternalDimension() - Method in class edu.stanford.rsl.conrad.geometry.shapes.compound.CompoundShape
getInternalDimension() - Method in class edu.stanford.rsl.conrad.geometry.shapes.compound.LinearOctree
getInternalDimension() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Box
getInternalDimension() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.SimpleSurface
getInternalDimension() - Method in class edu.stanford.rsl.conrad.geometry.splines.TimeVariantSurfaceBSpline
getInternalDimension() - Method in class edu.stanford.rsl.conrad.volume3d.Volume3D: returns 1 if the volume is real and 2 if it is complex
getInterpolatedGlobalCompensationLinearScaling(double) - Method in class edu.stanford.rsl.conrad.io.MotionFieldReader
getInterpolatedPixel(double, double) - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor: Uses the current interpolation method (BILINEAR or BICUBIC) to calculate the pixel value at real coordinates (x,y).
getInterpolator() - Method in class edu.stanford.rsl.conrad.utils.interpolation.NumberInterpolatingTreeMap: Retrieve the intepolator used by the class
getInvariants() - Method in class edu.stanford.rsl.conrad.geometry.motion.MixedSurfaceBSplineMotionField
getInverse() - Method in class edu.stanford.rsl.conrad.geometry.transforms.Quaternion
getjButtonBig() - Method in class edu.stanford.rsl.apps.gui.RawDataOpener
getjButtonDouble() - Method in class edu.stanford.rsl.apps.gui.RawDataOpener
getjButtonFloat() - Method in class edu.stanford.rsl.apps.gui.RawDataOpener
getjButtonLittle() - Method in class edu.stanford.rsl.apps.gui.RawDataOpener
getjButtonShort() - Method in class edu.stanford.rsl.apps.gui.RawDataOpener
getjButtonSShort() - Method in class edu.stanford.rsl.apps.gui.RawDataOpener
getK() - Method in class edu.stanford.rsl.conrad.geometry.Projection: Returns a const reference to the K matrix of intrinsic parameters.
getKernel() - Method in class edu.stanford.rsl.conrad.filtering.MeanFilteringTool
getKernelHeight() - Method in class edu.stanford.rsl.conrad.filtering.MeanFilteringTool
getKernelHeight() - Method in class edu.stanford.rsl.conrad.filtering.MedianFilteringTool
getKernelWidth() - Method in class edu.stanford.rsl.conrad.filtering.MeanFilteringTool
getKernelWidth() - Method in class edu.stanford.rsl.conrad.filtering.MedianFilteringTool
getKnots() - Method in class edu.stanford.rsl.conrad.geometry.splines.BSpline
getKnots() - Method in class edu.stanford.rsl.tutorial.motionEstimation.EstimateCubic2DSpline: Getter for the knot vector
getKnotVectorEntry(int) - Method in class edu.stanford.rsl.conrad.geometry.splines.BSpline: Returns the i-th knot vector entry.
getLabelMethod() - Method in class edu.stanford.rsl.apps.gui.blobdetection.ConnectedComponent3D: Return the value of this instance's labelMethod field
getLambda0(double, double) - Static method in class edu.stanford.rsl.conrad.filtering.VolumeAttenuationFactorCorrectionTool: Computes the lambda_0 factor according to Joseph and Spital.
getLastInternalIndex() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Edge
getLen() - Method in class edu.stanford.rsl.conrad.numerics.SimpleVector
getLength() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Edge: Returns length of edge in mm
getLinearfittedFunction(int) - Method in class edu.stanford.rsl.conrad.io.MotionFieldReader
GetLowandHighPassImage(float[][], float[][], float[][], float[][], float[][]) - Static method in class edu.stanford.rsl.conrad.utils.FFTUtil: Get Lowpass and HighPass Images for "real" image using "real" filters
getLowerbound() - Method in class edu.stanford.rsl.conrad.fitting.ConstrainedRANSACFittedFunction
getLowerTensorLevel() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.AnisotropicStructureTensorNoiseFilter
getLowestPriority() - Method in class edu.stanford.rsl.conrad.rendering.PrioritizableScene
getLowHyst() - Static method in class edu.stanford.rsl.conrad.filtering.multiprojection.DiaphragmTrackingTool
getLowHyst() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getLowPassFilterHeight() - Method in class edu.stanford.rsl.conrad.filtering.PrimaryModulationScatterCorrectionTool
getLowPassFilterWidth() - Method in class edu.stanford.rsl.conrad.filtering.PrimaryModulationScatterCorrectionTool
getLpUpper() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.AnisotropicStructureTensorNoiseFilter
getLpUpper() - Method in class edu.stanford.rsl.conrad.volume3d.operations.InitializeHighPass
getLpUpper() - Method in class edu.stanford.rsl.conrad.volume3d.operations.InitializeLowPass
getM() - Method in class edu.stanford.rsl.conrad.fitting.LinearFunction
getMagn() - Method in class edu.stanford.rsl.conrad.data.Complex
getMagnSubGrid(int, int, int, int) - Method in class edu.stanford.rsl.conrad.data.Grid2DComplex
getMagSubGrid(int, int) - Method in class edu.stanford.rsl.conrad.data.Grid1DComplex
getMassAttenuationData(WeightedAtomicComposition, double, AttenuationType) - Static method in class edu.stanford.rsl.conrad.physics.materials.database.OnlineMassAttenuationDB
getMassAttenuationData(WeightedAtomicComposition, String, ArrayList<AttenuationType>, boolean) - Static method in class edu.stanford.rsl.conrad.physics.materials.database.OnlineMassAttenuationDB: Retrieves energy dependent mass attenuation data from NIST XCOM database
getMassAttenuationData(String, double, AttenuationType) - Static method in class edu.stanford.rsl.conrad.physics.materials.utils.LocalMassAttenuationCalculator: Calculates the mass attenuation coefficient of a material given its formula
getMassAttenuationData(String, double[], AttenuationType) - Static method in class edu.stanford.rsl.conrad.physics.materials.utils.LocalMassAttenuationCalculator: Calculates the mass attenuation coefficient of a material given its formula
getMassAttenuationData(WeightedAtomicComposition, double[], AttenuationType) - Static method in class edu.stanford.rsl.conrad.physics.materials.utils.LocalMassAttenuationCalculator: Calculates the mass attenuation coefficient of a material given its WeightedAtomicComposition
getMassAttenuationData(WeightedAtomicComposition, double, AttenuationType) - Static method in class edu.stanford.rsl.conrad.physics.materials.utils.LocalMassAttenuationCalculator: Calculates the mass attenuation coefficient of a material given its weighted atomic composition.
getMassDensity(EnergyDependentCoefficients.Material) - Static method in class edu.stanford.rsl.conrad.physics.EnergyDependentCoefficients: Deprecated.

Returns the mass density of the material in [g/cm^3]
getMassEnergyAbsorptionLUT(EnergyDependentCoefficients.Material) - Static method in class edu.stanford.rsl.conrad.physics.EnergyDependentCoefficients: Deprecated.

Returns a LinearInterpolatingDoubleArray which reports the mass-energy absorption coeffients [cm^2/g] for the respective energies [MeV].
getMaterial(String) - Static method in class edu.stanford.rsl.conrad.physics.materials.database.MaterialsDB: Retrieves material associated with given identifier.
getMaterial() - Method in class edu.stanford.rsl.conrad.physics.PhysicalObject
getMaterialDensityLUT() - Static method in class edu.stanford.rsl.conrad.phantom.xcat.XCatMaterialGenerator: The material-name lookup table.
getMaterialsLocation() - Static method in class edu.stanford.rsl.conrad.physics.materials.database.MaterialsDB: Absolute file path of materials database
getMaterialWithFormula(String) - Static method in class edu.stanford.rsl.conrad.physics.materials.database.MaterialsDB: Retrieves material associated with given formula
getMaterialWithName(String) - Static method in class edu.stanford.rsl.conrad.physics.materials.database.MaterialsDB: Retrieves material associated with name
getMathExpression() - Method in class edu.stanford.rsl.conrad.numerics.mathexpressions.ExpressionParser: Returns a parse tree equivalent for supplied mathematical expression
getMatrixSerialization() - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix: return a serialized equivalent of this matix
getMax() - Method in class edu.stanford.rsl.conrad.geometry.AbstractShape
getMax() - Method in class edu.stanford.rsl.conrad.geometry.shapes.compound.CompoundShape
getMax() - Method in class edu.stanford.rsl.conrad.geometry.shapes.compound.LinearOctree
getMax() - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor: Returns the largest displayed pixel value.
getMax() - Method in class edu.stanford.rsl.conrad.rendering.AbstractScene
getMaxDistances(ImagePlus, int[][], double[][], EigenvalueDecomposition[]) - Method in class edu.stanford.rsl.apps.gui.blobdetection.ConnectedComponent3D: Get the maximum distances from the centroid in x, y, and z axes, and transformed x, y and z axes
getMaxIter() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getMaxIterations() - Static method in class edu.stanford.rsl.conrad.filtering.multiprojection.DiaphragmTrackingTool
getMaxMotion() - Method in class edu.stanford.rsl.conrad.io.MotionFieldReader
getMaxMotion() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getMeanfilterLen() - Method in class edu.stanford.rsl.conrad.filtering.PrimaryModulationScatterCorrectionTool
getMeanStdDev(ImagePlus, int[][], long[], int) - Method in class edu.stanford.rsl.apps.gui.blobdetection.ConnectedComponent3D: Get the mean and standard deviation of pixel values above a minimum value for each particle in a particle label work array
getMeasuredTwoDPoints() - Method in class edu.stanford.rsl.apps.gui.blobdetection.MarkerDetectionWorker
getMedianFilteredImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.MedianFilteringTool: Method to create the median filtered image.
getMedlineCitation() - Method in interface edu.stanford.rsl.apps.gui.Citeable: Returns the citation in Medline format
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.cuda.CUDABackProjector
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.cuda.CUDACompensatedBackProjector
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.cuda.CUDAForwardProjector: Returns a reference to literature describing this algorithm in Medline
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.cuda.CUDAForwardProjectorWithMotion: Returns a reference to literature describing this algorithm in Medline
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.AbsoluteValueTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.ApplyHounsfieldScaling
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.ApplyLambdaWeightingTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.AtractResidual2D
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.BilateralFilteringTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.CosineWeightingTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.DynamicDensityOptimizationScatterCorrectionTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.ExtremeValueTruncationFilter
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.FastRadialSymmetryTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.FiducialMarkerDetectionTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.Filtering2DTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.HilbertFilteringTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.HorizontalFlippingTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.HoughFilteringTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.ImageConstantMathFilter
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.ImageJParallelTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.ImageMathFilter
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.KinectBasedDetectorSaturationCorrectionTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.LaplaceFilteringTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.LogPoissonNoiseFilteringTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.MeanFilteringTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.MeanMarkerBasedProjectionShiftingTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.MeanMarkerBasedProjectionShiftingToolForXCAT
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.MedianFilteringTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.AnisotropicStructureTensorNoiseFilter
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.BilateralFilter3D
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.BlockWiseStructureTensor
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.DiaphragmTrackingTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.IdentityTransformFilter
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.IterativeReconstructionFilter
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.Lambda3DDerivativeFilter
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.ProjectionSortingFilter
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.Triangulation
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.NonLinearGainCorrectionTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.NumericalDerivativeComputationTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.NumericalLinewiseAntiderivativeFilteringTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.PoissonNoiseFilteringTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.PrimaryModulationScatterCorrectionTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.RampFilteringTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.NooWeightingTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.OSCARWeightingTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.ParkerWeightingTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.SilverWeightingTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.WesargWeightingTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.Rotate90DegreeLeftTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.ThinPlateSplinesBasedProjectionWarpingTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.ThinPlateSplinesBasedProjectionWarpingToolForXCAT
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.TruncationCorrectionTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.filtering.VolumeAttenuationFactorCorrectionTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.geometry.splines.SurfaceBSplineVolumePhantom
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.io.ImagePlusDataSink
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.io.IndividualFilesProjectionDataSink
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.metric.MeanSquareErrorMetric
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.metric.NormalizedImprovement
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLBackProjector
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLForwardProjector: Returns a reference to literature describing this algorithm in Medline
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLForwardProjectorWithMotion: Returns a reference to literature describing this algorithm in Medline
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLProjectionPhantomRenderer
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.phantom.BeadRemovalPhantom
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.phantom.BoxPhantom
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.phantom.CatheterPhantom
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.phantom.CatphanCTP528
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.phantom.DefrisePhantom
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.phantom.electrondensity.CrisEDPhantomM062
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.phantom.forbild.ForbildPhantom
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.phantom.MovingBallPhantom
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.phantom.MTFBeadPhantom
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.phantom.renderer.AnalyticPhantomProjector
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.phantom.renderer.CylinderPhantomRenderer
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.phantom.renderer.RampProjectionPhantomRenderer
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.phantom.renderer.SliceParallelVolumePhantomRenderer
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.phantom.SevenBeadPhantom
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.phantom.SheppLoganPhantom
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.phantom.SpherePhantom
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.phantom.WaterCylinderPhantom
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.phantom.workers.AnalyticPhantom3DVolumeRenderer
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.phantom.workers.AnalyticPhantomProjectorWorker
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.phantom.workers.DiracProjectionPhantom
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.phantom.workers.SheppLoganPhantomWorker
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.phantom.workers.VolumeOfInterestPhantom
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.phantom.xcat.CoronaryScene
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.phantom.xcat.HeartScene
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.phantom.xcat.WholeBodyScene
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.pipeline.DevNullSink
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.pipeline.IndividualImagePipelineFilteringTool
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.CPUSuperShortScanBackprojector
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.DistanceDrivenBasedReconstruction
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.DistanceDrivenBasedReconstruction
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.RayDrivenBasedReconstruction
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.SeparableFootprintsBasedReconstruction
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.LolaBunnyBackprojector
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.MotionCompensatedSubVolumeBackprojector
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.MotionCompensatedVOIBasedReconstructionFilter
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.RayDrivenBasedReconstruction
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.RayWeightCorrectingCPUSuperShortScanBackprojector
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.RigidBody3DTransformationVOIBasedReconstructionFilter
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.RigidBody3DTransformationVOIBasedReconstructionFilterForXCAT
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.SeparableFootprintsBasedReconstruction
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.SimpleIterativeReconstruction
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.SubVolumeBackprojector
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.SuperShortScanBackprojection: Deprecated.
getMedlineCitation() - Method in class edu.stanford.rsl.conrad.reconstruction.VOIBasedReconstructionFilter
getMedlineCitation() - Method in class edu.stanford.rsl.tutorial.motionEstimation.OpenCLCompensatedBackProjector
getMedlineCitation() - Method in class edu.stanford.rsl.tutorial.motionEstimation.OpenCLCompensatedBackProjector1DCompressionField
getMedlineCitation() - Method in class edu.stanford.rsl.tutorial.motionEstimation.OpenCLCompensatedBackProjectorTPS
getMedlineCitation() - Method in class edu.stanford.rsl.tutorial.truncation.ConstantValueZeroArtifactImage
getMedlineCitation() - Method in class edu.stanford.rsl.tutorial.truncation.NonZeroArtifactImage
getMergedTwoDPositions() - Method in class edu.stanford.rsl.apps.gui.blobdetection.MarkerDetectionWorker
getMesh() - Method in class edu.stanford.rsl.conrad.utils.LinearInterpolatingDoubleArray
getMetrics() - Static method in class edu.stanford.rsl.conrad.metric.ImageMetric
getMin() - Method in class edu.stanford.rsl.conrad.geometry.AbstractShape
getMin() - Method in class edu.stanford.rsl.conrad.geometry.shapes.compound.CompoundShape
getMin() - Method in class edu.stanford.rsl.conrad.geometry.shapes.compound.LinearOctree
getMin() - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor: Returns the smallest displayed pixel value.
getMin() - Method in class edu.stanford.rsl.conrad.rendering.AbstractScene
getMinimumNumberOfCorrespondences() - Method in class edu.stanford.rsl.conrad.fitting.Function
getMinimumNumberOfCorrespondences() - Method in class edu.stanford.rsl.conrad.fitting.GaussianFunction
getMinimumNumberOfCorrespondences() - Method in class edu.stanford.rsl.conrad.fitting.IdentityFunction
getMinimumNumberOfCorrespondences() - Method in class edu.stanford.rsl.conrad.fitting.LinearFunction
getMinimumNumberOfCorrespondences() - Method in class edu.stanford.rsl.conrad.fitting.LogarithmicFunction
getMinimumNumberOfCorrespondences() - Method in class edu.stanford.rsl.conrad.fitting.PolynomialFunction
getMinimumNumberOfCorrespondences() - Method in class edu.stanford.rsl.conrad.fitting.Quadric
getMinimumNumberOfCorrespondences() - Method in class edu.stanford.rsl.conrad.fitting.RANSACFittedFunction
getMinimumNumberOfCorrespondences() - Method in class edu.stanford.rsl.conrad.fitting.Surface
getModelWorker() - Method in class edu.stanford.rsl.conrad.phantom.renderer.SliceParallelVolumePhantomRenderer
getModulationFunction(String) - Static method in class edu.stanford.rsl.conrad.filtering.PrimaryModulationScatterCorrectionTool: Loads the modulation function from disk if required.
getModulationFunctionFilename() - Method in class edu.stanford.rsl.conrad.filtering.PrimaryModulationScatterCorrectionTool
getMotion() - Method in class edu.stanford.rsl.conrad.io.MotionFieldReader
getMotionField() - Method in class edu.stanford.rsl.conrad.phantom.AnalyticPhantom4D
getMotionField() - Method in class edu.stanford.rsl.conrad.phantom.xcat.BreathingScene
getMotionField() - Method in class edu.stanford.rsl.conrad.phantom.xcat.CombinedBreathingHeartScene
getMotionField() - Method in class edu.stanford.rsl.conrad.phantom.xcat.HeartScene
getMotionField() - Method in class edu.stanford.rsl.conrad.phantom.xcat.SquatScene
getMotionField() - Method in class edu.stanford.rsl.conrad.reconstruction.MotionCompensatedVOIBasedReconstructionFilter
getMotionField(float[], int, double, double) - Method in class edu.stanford.rsl.tutorial.motionEstimation.InitialOptimization: This method computes the motionfield given the optimized parameter array from the optimization functions
getMotionFieldAsArray(double, double) - Method in class edu.stanford.rsl.conrad.geometry.motion.OpenCLParzenWindowMotionField
getMotionFieldAsArrayRandomBallCover(double, double, int) - Method in class edu.stanford.rsl.conrad.geometry.motion.OpenCLParzenWindowMotionField
getMotionFieldAsArrayReduceZ(double, double) - Method in class edu.stanford.rsl.conrad.geometry.motion.OpenCLParzenWindowMotionField
getMotionFieldAsArrayReduceZGridXY(double, double, int, int) - Method in class edu.stanford.rsl.conrad.geometry.motion.OpenCLParzenWindowMotionField
getMu() - Method in class edu.stanford.rsl.conrad.fitting.GaussianFunction
getName() - Method in class edu.stanford.rsl.conrad.cuda.CUDABackProjector
getName() - Method in class edu.stanford.rsl.conrad.cuda.CUDACompensatedBackProjector
getName() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.MultiProjectionFilter
getName() - Method in class edu.stanford.rsl.conrad.geometry.AbstractShape
getName() - Method in class edu.stanford.rsl.conrad.io.ImagePlusDataSink
getName() - Method in class edu.stanford.rsl.conrad.io.IndividualFilesProjectionDataSink
getName() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLBackProjector
getName() - Method in class edu.stanford.rsl.conrad.phantom.AnalyticPhantom
getName() - Method in class edu.stanford.rsl.conrad.phantom.BeadRemovalPhantom
getName() - Method in class edu.stanford.rsl.conrad.phantom.BoxPhantom
getName() - Method in class edu.stanford.rsl.conrad.phantom.CatheterPhantom
getName() - Method in class edu.stanford.rsl.conrad.phantom.CatphanCTP528
getName() - Method in class edu.stanford.rsl.conrad.phantom.DefrisePhantom
getName() - Method in class edu.stanford.rsl.conrad.phantom.electrondensity.CrisEDPhantomM062
getName() - Method in class edu.stanford.rsl.conrad.phantom.forbild.ForbildPhantom
getName() - Method in class edu.stanford.rsl.conrad.phantom.MovingBallPhantom
getName() - Method in class edu.stanford.rsl.conrad.phantom.MTFBeadPhantom
getName() - Method in class edu.stanford.rsl.conrad.phantom.SevenBeadPhantom
getName() - Method in class edu.stanford.rsl.conrad.phantom.SheppLoganPhantom
getName() - Method in class edu.stanford.rsl.conrad.phantom.SpherePhantom
getName() - Method in class edu.stanford.rsl.conrad.phantom.WaterCylinderPhantom
getName() - Method in class edu.stanford.rsl.conrad.phantom.xcat.BreathingScene
getName() - Method in class edu.stanford.rsl.conrad.phantom.xcat.CombinedBreathingHeartScene
getName() - Method in class edu.stanford.rsl.conrad.phantom.xcat.CoronaryScene
getName() - Method in class edu.stanford.rsl.conrad.phantom.xcat.DynamicSquatScene
getName() - Method in class edu.stanford.rsl.conrad.phantom.xcat.HeartScene
getName() - Method in class edu.stanford.rsl.conrad.phantom.xcat.SquatScene
getName() - Method in class edu.stanford.rsl.conrad.phantom.xcat.WholeBodyScene
getName(String) - Static method in class edu.stanford.rsl.conrad.physics.materials.database.FormulaToNameMap: Retrieves the material name corresponding to the given formula
getName() - Method in class edu.stanford.rsl.conrad.physics.materials.Material: Retrieve the name of the material
getName() - Method in enum edu.stanford.rsl.conrad.physics.materials.utils.AttenuationType
getName() - Method in class edu.stanford.rsl.conrad.pipeline.BufferedProjectionSink
getName() - Method in class edu.stanford.rsl.conrad.pipeline.DevNullSink
getName() - Method in class edu.stanford.rsl.conrad.pipeline.ParallelImageFilterSink
getName() - Method in interface edu.stanford.rsl.conrad.pipeline.ProjectionSink
getName() - Method in class edu.stanford.rsl.conrad.reconstruction.CPUSuperShortScanBackprojector
getName() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.ModelBasedIterativeReconstruction
getName() - Method in class edu.stanford.rsl.conrad.reconstruction.ModelBasedIterativeReconstruction
getName() - Method in class edu.stanford.rsl.conrad.reconstruction.MotionCompensatedSubVolumeBackprojector
getName() - Method in class edu.stanford.rsl.conrad.reconstruction.MotionCompensatedVOIBasedReconstructionFilter
getName() - Method in class edu.stanford.rsl.conrad.reconstruction.RayWeightCorrectingCPUSuperShortScanBackprojector
getName() - Method in class edu.stanford.rsl.conrad.reconstruction.RigidBody3DTransformationVOIBasedReconstructionFilter
getName() - Method in class edu.stanford.rsl.conrad.reconstruction.RigidBody3DTransformationVOIBasedReconstructionFilterForXCAT
getName() - Method in class edu.stanford.rsl.conrad.reconstruction.SubVolumeBackprojector
getName() - Method in class edu.stanford.rsl.conrad.reconstruction.SuperShortScanBackprojection: Deprecated.
getName() - Method in class edu.stanford.rsl.conrad.reconstruction.VOIBasedReconstructionFilter
getName() - Method in class edu.stanford.rsl.conrad.rendering.AbstractScene
getNameString() - Method in class edu.stanford.rsl.conrad.physics.PhysicalObject
getNCavities(ImagePlus) - Method in class edu.stanford.rsl.apps.gui.blobdetection.ConnectedComponent3D
getNChunks(ImagePlus, int) - Method in class edu.stanford.rsl.apps.gui.blobdetection.ConnectedComponent3D: Gets number of chunks needed to divide a stack into evenly-sized sets of slices.
getNext() - Method in class edu.stanford.rsl.conrad.data.iterators.FloatIterator
getNext() - Method in class edu.stanford.rsl.conrad.data.iterators.PointwiseIterator
getNext() - Method in class edu.stanford.rsl.conrad.data.iterators.PointwiseIterator1D
getNext() - Method in class edu.stanford.rsl.conrad.data.iterators.PointwiseIterator2D
getNext() - Method in class edu.stanford.rsl.conrad.data.iterators.PointwiseIterator3D
getNextPowerOfTwo(int) - Static method in class edu.stanford.rsl.conrad.utils.FFTUtil: Returns the NEXT power of 2 given a certain integer value For power of twos it also returns the next power of 2, e.g.
getNextProjection(IndividualImagePipelineFilteringTool) - Method in class edu.stanford.rsl.conrad.io.FileProjectionSource
getNextProjection() - Method in class edu.stanford.rsl.conrad.io.FileProjectionSource
getNextProjection() - Method in class edu.stanford.rsl.conrad.io.ImagePlusProjectionDataSource
getNextProjection() - Method in class edu.stanford.rsl.conrad.io.SEQProjectionSource
getNextProjection() - Method in class edu.stanford.rsl.conrad.io.ZipProjectionSource
getNextProjection() - Method in class edu.stanford.rsl.conrad.phantom.renderer.AnalyticPhantomProjector
getNextProjection(IndividualImagePipelineFilteringTool) - Method in class edu.stanford.rsl.conrad.phantom.renderer.PhantomRenderer
getNextProjection() - Method in class edu.stanford.rsl.conrad.phantom.renderer.RampProjectionPhantomRenderer
getNextProjection() - Method in class edu.stanford.rsl.conrad.phantom.renderer.StreamingPhantomRenderer
getNextProjection(IndividualImagePipelineFilteringTool) - Method in class edu.stanford.rsl.conrad.pipeline.ParallelImageFilterSink
getNextProjection() - Method in class edu.stanford.rsl.conrad.pipeline.ParallelImageFilterSink
getNextProjection(IndividualImagePipelineFilteringTool) - Method in interface edu.stanford.rsl.conrad.pipeline.ProjectionSource: Writes the next projection into an IndividualImagePipelineFiltering tool, i.e.
getNextProjection() - Method in interface edu.stanford.rsl.conrad.pipeline.ProjectionSource: Returns the next projection.
getNormal() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Plane3D
getNormalizationImage() - Method in class edu.stanford.rsl.conrad.metric.NormalizedImageMetric
getNTimes() - Method in class edu.stanford.rsl.conrad.filtering.HilbertFilteringTool
getnTimes() - Method in class edu.stanford.rsl.conrad.filtering.NumericalDerivativeComputationTool
getNumberOfBSplineTimePoints() - Method in class edu.stanford.rsl.conrad.phantom.xcat.BreathingScene
getNumberOfElements() - Method in class edu.stanford.rsl.conrad.data.Grid: Get number of float elements
getNumberOfElements() - Method in class edu.stanford.rsl.conrad.data.Grid2DComplex
getNumberOfParameters() - Method in class edu.stanford.rsl.conrad.fitting.Function
getNumberOfParameters() - Method in class edu.stanford.rsl.conrad.fitting.Surface
getNumberOfPointSets() - Method in class edu.stanford.rsl.apps.gui.pointselector.PointSelectorWorker
getNumberOfProjections() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.ParkerWeightingTool
getNumberOfThreads() - Static method in class edu.stanford.rsl.conrad.utils.CONRAD: Returns the number of processors which should be used by CONRAD.
getNumberOfTimePoints() - Method in class edu.stanford.rsl.conrad.geometry.splines.TimeVariantSurfaceBSpline
getNumberOfTries() - Method in class edu.stanford.rsl.conrad.fitting.RANSACFittedFunction
getNumberOfUPoints() - Method in class edu.stanford.rsl.conrad.geometry.splines.SurfaceBSpline
getNumberOfVPoints() - Method in class edu.stanford.rsl.conrad.geometry.splines.SurfaceBSpline
getNumericalSheppLoganPhantom() - Method in class edu.stanford.rsl.conrad.phantom.NumericalSheppLogan3D
getNumProjectionMatrices() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getNumSweeps() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getObject() - Method in class edu.stanford.rsl.conrad.physics.PhysicalPoint
getObject(int) - Method in class edu.stanford.rsl.conrad.rendering.PrioritizableScene
getObjects() - Method in class edu.stanford.rsl.conrad.phantom.xcat.TessellationThread
getOpenCLEvaluatableSubclass(AbstractShape, CLDevice) - Static method in class edu.stanford.rsl.conrad.opencl.OpenCLUtil
getOpenCLForwardProjectorInstance() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLForwardProjector: Get the current OpenCL program instance
getOpenCLForwardProjectorInstance() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLForwardProjectorWithMotion: Get the current OpenCL program instance
getOperand() - Method in class edu.stanford.rsl.conrad.filtering.ImageConstantMathFilter
getOperation() - Method in class edu.stanford.rsl.conrad.filtering.ExtremeValueTruncationFilter
getOperation() - Method in class edu.stanford.rsl.conrad.filtering.ImageConstantMathFilter
getOperation() - Method in class edu.stanford.rsl.conrad.filtering.ImageJParallelTool
getOperation() - Method in class edu.stanford.rsl.conrad.filtering.ImageMathFilter
getOptimalLambda() - Method in class edu.stanford.rsl.conrad.physics.LambdaFunction: Method to access the optimal lambda after optimization.
getOptimalX() - Method in class edu.stanford.rsl.conrad.physics.HalfValueLayerFunction
getOrder() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.IRRFilter
getOrigin() - Method in class edu.stanford.rsl.conrad.data.Grid
getOriginInPixelsX() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getOriginInPixelsY() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getOriginInPixelsZ() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getOriginX() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getOriginY() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getOriginZ() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getOutputBlock() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.blocks.ImageProcessingBlock
getOutputSpectrum() - Method in class edu.stanford.rsl.conrad.physics.absorption.PolychromaticAbsorptionModel: Retrieve the X-Ray spectrum after absorption.
getParameters() - Method in class edu.stanford.rsl.conrad.filtering.ImageJParallelTool
getParametersAsDoubleArray() - Method in class edu.stanford.rsl.conrad.fitting.Function
getParametersAsDoubleArray() - Method in class edu.stanford.rsl.conrad.fitting.GaussianFunction
getParametersAsDoubleArray() - Method in class edu.stanford.rsl.conrad.fitting.IdentityFunction
getParametersAsDoubleArray() - Method in class edu.stanford.rsl.conrad.fitting.LinearFunction
getParametersAsDoubleArray() - Method in class edu.stanford.rsl.conrad.fitting.LogarithmicFunction
getParametersAsDoubleArray() - Method in class edu.stanford.rsl.conrad.fitting.PolynomialFunction
getParametersAsDoubleArray() - Method in class edu.stanford.rsl.conrad.fitting.Quadric
getParametersAsDoubleArray() - Method in class edu.stanford.rsl.conrad.fitting.RANSACFittedFunction
getParametersAsDoubleArray() - Method in class edu.stanford.rsl.conrad.fitting.Surface
getParentFrame() - Method in class edu.stanford.rsl.apps.gui.ConfigurationFrame
getParentFrame() - Method in class edu.stanford.rsl.apps.gui.ConfigurePipelineFrame
getParentFrame() - Method in class edu.stanford.rsl.apps.gui.GUICompatibleObjectVisualizationPanel
getParticleLimits(ImagePlus, int[][], int) - Method in class edu.stanford.rsl.apps.gui.blobdetection.ConnectedComponent3D: Get the minimum and maximum x, y and z coordinates of each particle
getParticleLists(int[][], int, int, int, int) - Method in class edu.stanford.rsl.apps.gui.blobdetection.ConnectedComponent3D
getParticles(ImagePlus, int, double, double, int, boolean) - Method in class edu.stanford.rsl.apps.gui.blobdetection.ConnectedComponent3D: Get particles, particle labels and particle sizes from a 3D ImagePlus
getParticles(ImagePlus, int, double, double, int) - Method in class edu.stanford.rsl.apps.gui.blobdetection.ConnectedComponent3D
getParticles(ImagePlus, int, int) - Method in class edu.stanford.rsl.apps.gui.blobdetection.ConnectedComponent3D
getParticles(ImagePlus, byte[][], int, int, int) - Method in class edu.stanford.rsl.apps.gui.blobdetection.ConnectedComponent3D
getParticles(ImagePlus, byte[][], int, double, double, int) - Method in class edu.stanford.rsl.apps.gui.blobdetection.ConnectedComponent3D
getParticles(ImagePlus, byte[][], int, double, double, int, boolean) - Method in class edu.stanford.rsl.apps.gui.blobdetection.ConnectedComponent3D: Get particles, particle labels and sizes from a workArray using an ImagePlus for scale information
getParticleSizes(int[][]) - Method in class edu.stanford.rsl.apps.gui.blobdetection.ConnectedComponent3D: Get the sizes of all the particles as a voxel count
getPhantoms() - Static method in class edu.stanford.rsl.conrad.phantom.renderer.PhantomRenderer: Returns a list of all known numerical phantoms.
getPhase1() - Method in class edu.stanford.rsl.conrad.geometry.motion.timewarp.DualPhasePeriodicTimeWarper
getPhaseSubGrid(int, int) - Method in class edu.stanford.rsl.conrad.data.Grid1DComplex
getPhaseSubGrid(int, int, int, int) - Method in class edu.stanford.rsl.conrad.data.Grid2DComplex
getPhotonCount() - Method in class edu.stanford.rsl.conrad.physics.PolychromaticXRaySpectrum
getPhotonCountMax() - Method in class edu.stanford.rsl.conrad.filtering.LogPoissonNoiseFilteringTool
getPhotonEnergies() - Method in class edu.stanford.rsl.conrad.physics.PolychromaticXRaySpectrum
getPhotonMassAttenuationLUT(EnergyDependentCoefficients.Material) - Static method in class edu.stanford.rsl.conrad.physics.EnergyDependentCoefficients: Deprecated.

Returns a LinearInterpolatingDoubleArray which reports the photon mass attenuation coeffients [1/cm] for the respective energies [MeV].
getPhotonMassAttenuationOverRhoLUT(EnergyDependentCoefficients.Material) - Static method in class edu.stanford.rsl.conrad.physics.EnergyDependentCoefficients: Deprecated.

Returns a LinearInterpolatingDoubleArray which reports the photon mass attenuation coefficients over rho [cm^2/g] for the respective energies [MeV].
getPhysicalPixelWidthInMilimeters() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.RampFilter
getPImag(int) - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.IRRFilter
getPipeline() - Method in class edu.stanford.rsl.conrad.pipeline.IndividualImagePipelineFilteringTool
getPipelineClone(ImageFilteringTool[]) - Static method in class edu.stanford.rsl.conrad.pipeline.ParallelImageFilterPipeliner
getPixel(int, int) - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor: Returns a pixel value that must be converted using Float.intBitsToFloat().
getPixel(int, int, int[]) - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor: Returns the value of the pixel at (x,y) in a one element int array.
getPixelDimensionX() - Method in class edu.stanford.rsl.conrad.filtering.CosineWeightingTool
getPixelDimensionX() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.ParkerWeightingTool
getPixelDimensionX() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getPixelDimensionY() - Method in class edu.stanford.rsl.conrad.filtering.CosineWeightingTool
getPixelDimensionY() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getPixelHeight() - Method in class edu.stanford.rsl.conrad.rendering.RayDetector
getPixelInterpolated(double, double) - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor
getPixels(ImagePlus, double, double, double, double, double, double, int) - Method in class edu.stanford.rsl.apps.gui.roi.Measure3DBeadMTF: Method to perform trilinear interpolation along a line through an ImagePlus.
getPixels() - Method in class edu.stanford.rsl.conrad.data.Grid2D
getPixels() - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor: Returns a reference to the float array containing this image's pixel data.
getPixelsCopy() - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor: Returns a copy of the pixel data.
getPixelValue(int, int) - Method in class edu.stanford.rsl.conrad.data.Grid2D: Get the pixel value at position (x,y)
getPixelValue(int, int) - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor: Returns the value of the pixel at (x,y) as a float.
getPixelWidth() - Method in class edu.stanford.rsl.conrad.rendering.RayDetector
getPlane(String) - Static method in class edu.stanford.rsl.conrad.numerics.mathexpressions.Evaluator: Evaluates string literals of form (x,y,z) >(<) offset, where (x,y,z) is a normal vector;
getPlane(String, Map<String, Double>) - Static method in class edu.stanford.rsl.conrad.numerics.mathexpressions.Evaluator
getPMatrixSerialization() - Method in class edu.stanford.rsl.conrad.geometry.Projection: This method is only used for XML serialization.
getPoint() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Plane3D
getPoint() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.StraightLine
getPointCorrespondences() - Method in class edu.stanford.rsl.conrad.reconstruction.MotionCompensatedVOIBasedReconstructionFilter
getPointSet(int) - Method in class edu.stanford.rsl.apps.gui.pointselector.PointSelectorWorker
getPointValue(String) - Static method in class edu.stanford.rsl.conrad.numerics.mathexpressions.Evaluator: Evaluates the string literals in a string vector;
getPointValue(String, Map<String, Double>) - Static method in class edu.stanford.rsl.conrad.numerics.mathexpressions.Evaluator: Evaluates the string literals in a string vector and replaces variables with values in map;
getPosition() - Method in class edu.stanford.rsl.conrad.data.iterators.FloatIterator
getPosition(PointND, double, double) - Method in class edu.stanford.rsl.conrad.geometry.motion.AffineMotionField
getPosition(PointND, double, double) - Method in class edu.stanford.rsl.conrad.geometry.motion.CompressionMotionField
getPosition(PointND, double, double) - Method in class edu.stanford.rsl.conrad.geometry.motion.ConstantMotionField
getPosition(PointND, double, double) - Method in class edu.stanford.rsl.conrad.geometry.motion.DualMotionField
getPosition(PointND, double, double) - Method in interface edu.stanford.rsl.conrad.geometry.motion.MotionField: Determines the position at a given initialPosition and a given time where time = 0 is the initial position and time = 1 is the end position.
getPosition(PointND, double, double) - Method in class edu.stanford.rsl.conrad.geometry.motion.MovingCenterRotationMotionField
getPosition(PointND, double, double) - Method in class edu.stanford.rsl.conrad.geometry.motion.ParzenWindowMotionField
getPosition(PointND, double, double) - Method in class edu.stanford.rsl.conrad.geometry.motion.PlanarMotionField
getPosition(PointND, double, double) - Method in class edu.stanford.rsl.conrad.geometry.motion.PointBasedMotionField
getPosition(PointND, double, double) - Method in class edu.stanford.rsl.conrad.geometry.motion.RotationMotionField
getPosition(PointND, double, double) - Method in class edu.stanford.rsl.conrad.geometry.motion.SimpleMotionField
getPosition(PointND, double, double) - Method in class edu.stanford.rsl.conrad.geometry.motion.VICONMarkerMotionField
getPosition() - Method in class edu.stanford.rsl.conrad.io.MotionFieldReader
getPosition(PointND, double, double) - Method in class edu.stanford.rsl.conrad.phantom.MovingBallPhantom
getPosition(PointND, double, double) - Method in class edu.stanford.rsl.conrad.phantom.xcat.BreathingScene
getPosition(PointND, double, double) - Method in class edu.stanford.rsl.conrad.phantom.xcat.CombinedBreathingHeartScene
getPosition(PointND, double, double) - Method in class edu.stanford.rsl.conrad.phantom.xcat.CoronaryScene
getPosition(PointND, double, double) - Method in class edu.stanford.rsl.conrad.phantom.xcat.HeartScene
getPosition(PointND, double, double) - Method in class edu.stanford.rsl.conrad.phantom.xcat.SquatScene
getPosition(PointND, double, double) - Method in class edu.stanford.rsl.conrad.phantom.xcat.WholeBodyScene
getPosition_old(PointND, double, double) - Method in class edu.stanford.rsl.conrad.phantom.xcat.CombinedBreathingHeartScene
getPositions(PointND, double, double...) - Method in interface edu.stanford.rsl.conrad.geometry.motion.MotionField
getPositions(PointND, double, double...) - Method in class edu.stanford.rsl.conrad.geometry.motion.ParzenWindowMotionField
getPositions(PointND, double, double...) - Method in class edu.stanford.rsl.conrad.geometry.motion.PlanarMotionField
getPositions(PointND, double, double...) - Method in class edu.stanford.rsl.conrad.geometry.motion.PointBasedMotionField
getPositions(PointND, double, double...) - Method in class edu.stanford.rsl.conrad.geometry.motion.SimpleMotionField
getPositions(PointND, double, double...) - Method in class edu.stanford.rsl.conrad.phantom.MovingBallPhantom
getPositions(PointND, double, double...) - Method in class edu.stanford.rsl.conrad.phantom.xcat.BreathingScene
getPositions(PointND, double, double...) - Method in class edu.stanford.rsl.conrad.phantom.xcat.CombinedBreathingHeartScene
getPositions(PointND, double, double...) - Method in class edu.stanford.rsl.conrad.phantom.xcat.CoronaryScene
getPositions(PointND, double, double...) - Method in class edu.stanford.rsl.conrad.phantom.xcat.HeartScene
getPositions(PointND, double, double...) - Method in class edu.stanford.rsl.conrad.phantom.xcat.SquatScene
getPositions(PointND, double, double...) - Method in class edu.stanford.rsl.conrad.phantom.xcat.WholeBodyScene
getPositions_old(PointND, double, double...) - Method in class edu.stanford.rsl.conrad.phantom.xcat.CombinedBreathingHeartScene
getPowerSpectrum(Grid2D) - Static method in class edu.stanford.rsl.conrad.utils.FFTUtil: Returns the 2D power spectrum of a given image processor.
getPReal(int) - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.IRRFilter
getPrefix() - Method in class edu.stanford.rsl.conrad.io.IndividualFilesProjectionDataSink
getPreviousGroup() - Method in class edu.stanford.rsl.conrad.utils.DicomDecoder
getPreviousInfo() - Method in class edu.stanford.rsl.conrad.utils.DicomDecoder
getPrimaryAngles() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.ParkerWeightingTool
getPrimaryAngles() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getPrimaryAnglesString() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getPrincipalAxis() - Method in class edu.stanford.rsl.conrad.geometry.shapes.ArbitrarySurface
getPrincipalAxis() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Box
getPrincipalAxis() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Cone
getPrincipalAxis() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Cylinder
getPrincipalAxis() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Ellipsoid
getPrincipalAxis() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.SimpleSurface
getPrincipalAxis() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Sphere
getPrincipalPoint() - Method in class edu.stanford.rsl.conrad.geometry.Projection: Returns the principal point in pixels.
getPrincipalPointInMM() - Method in class edu.stanford.rsl.conrad.rendering.RayDetector
getPrincipalPointInPixels() - Method in class edu.stanford.rsl.conrad.rendering.RayDetector
getPriority(PhysicalObject) - Method in class edu.stanford.rsl.conrad.rendering.PrioritizableScene
getProcessName() - Method in class edu.stanford.rsl.conrad.filtering.IndividualImageFilteringTool
getProcessName() - Method in class edu.stanford.rsl.conrad.geometry.splines.SurfaceBSplineVolumePhantom
getProcessName() - Method in interface edu.stanford.rsl.conrad.parallel.NamedParallelizableRunnable
getProcessName() - Method in class edu.stanford.rsl.conrad.parallel.SimpleParallelThread
getProcessName() - Method in class edu.stanford.rsl.conrad.phantom.workers.AnalyticPhantom3DVolumeRenderer
getProcessName() - Method in class edu.stanford.rsl.conrad.phantom.workers.AnalyticPhantomProjectorWorker
getProcessName() - Method in class edu.stanford.rsl.conrad.phantom.workers.DiracProjectionPhantom
getProcessName() - Method in class edu.stanford.rsl.conrad.phantom.workers.SheppLoganPhantomWorker
getProcessName() - Method in class edu.stanford.rsl.conrad.phantom.workers.VolumeOfInterestPhantom
getProcessName() - Method in class edu.stanford.rsl.conrad.phantom.xcat.TessellationThread
getProcessName() - Method in class edu.stanford.rsl.conrad.pipeline.ParallelProjectionDataSinkFeeder
getProgramInstance() - Static method in class edu.stanford.rsl.conrad.opencl.OpenCLUtil
getProjection() - Method in class edu.stanford.rsl.conrad.pipeline.ParallelProjectionDataSinkFeeder
getProjectionDataSinks() - Static method in class edu.stanford.rsl.conrad.pipeline.BufferedProjectionSink
getProjectionMatrices() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getProjectionMatrix(int) - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getProjectionNumber() - Method in class edu.stanford.rsl.conrad.pipeline.ParallelProjectionDataSinkFeeder
getProjections() - Method in class edu.stanford.rsl.tutorial.motionEstimation.ProjectionLoader
getProjectionSource() - Method in class edu.stanford.rsl.conrad.pipeline.IndividualImagePipelineFilteringTool
getProjectionSources() - Static method in class edu.stanford.rsl.conrad.io.FileProjectionSource
getProjectionStackSize() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getProjectionTableFileName() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getProjectionViews() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.ModelBasedIterativeReconstruction
getProjectionVolume() - Method in class edu.stanford.rsl.conrad.pipeline.BufferedProjectionSink
getProjTurningAngle() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getPrototype() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.IRRFilter
getPts() - Method in class edu.stanford.rsl.conrad.io.VTKMeshReader: Getter for the read-in meshpoints
getPts() - Method in class edu.stanford.rsl.tutorial.motionEstimation.OpenCLCompensatedBackProjectorTPS
getQ() - Method in class edu.stanford.rsl.conrad.numerics.DecompositionQR: Compute Q from the internal storage QR.
getQ() - Method in class edu.stanford.rsl.conrad.numerics.DecompositionRQ: Computes the orthogonal $n \times n$ matrix $\mathbf{Q}$ .
getR() - Method in class edu.stanford.rsl.conrad.geometry.Projection: Returns a const reference to the rotation matrix R.
getR() - Method in class edu.stanford.rsl.conrad.numerics.DecompositionQR: Compute R from the internal storages QR and Rdiag.
getR() - Method in class edu.stanford.rsl.conrad.numerics.DecompositionRQ: Computes the upper-triangular $m \times n$ matrix $\mathbf{R}$ .
getRadii() - Method in class edu.stanford.rsl.apps.gui.blobdetection.MarkerDetectionWorker
getRadii() - Method in class edu.stanford.rsl.conrad.filtering.FastRadialSymmetryTool
getRadius() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Sphere
getRamp() - Method in class edu.stanford.rsl.conrad.filtering.RampFilteringTool
getRampFilter(int) - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.RampFilter: Method to generate a filter for in Fourier space given the width of the image to filter
getRampFilter1D(int) - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.ArbitraryRampFilter
getRampFilter1D(int) - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.RampFilter: Returns the filter for one detector row as complex double array (JTransforms format)
getRampFilter1D(int) - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.SheppLoganRampFilterWithRollOff
getRampName() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.ArbitraryRampFilter
getRampName() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.CosineRampFilter
getRampName() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.HammingRampFilter
getRampName() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.HanningRampFilter
getRampName() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.RamLakRampFilter
getRampName() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.RampFilter
getRampName() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.SheppLoganRampFilter
getRampName() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.SheppLoganRampFilterWithRollOff
getRandomDouble(double, double) - Method in class edu.stanford.rsl.conrad.filtering.MeanMarkerBasedProjectionShiftingToolForXCAT
getRandomDouble(double, double) - Method in class edu.stanford.rsl.conrad.filtering.ThinPlateSplinesBasedProjectionWarpingToolForXCAT
getRANSACfittedFunction(double[], double[]) - Method in class edu.stanford.rsl.conrad.io.MotionFieldReader
getRasterPoints(int) - Method in class edu.stanford.rsl.conrad.geometry.AbstractShape: Rasters the shape with a given number of points or less.
getRasterPoints(int) - Method in class edu.stanford.rsl.conrad.geometry.ConvexHull
getRasterPoints(int) - Method in class edu.stanford.rsl.conrad.geometry.shapes.ArbitrarySurface
getRasterPoints(int) - Method in class edu.stanford.rsl.conrad.geometry.shapes.compound.CompoundShape
getRasterPoints(int) - Method in class edu.stanford.rsl.conrad.geometry.shapes.compound.LinearOctree
getRasterPoints(int) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Box
getRasterPoints(int, int) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Box
getRasterPoints(int) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Cone
getRasterPoints(int) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Cylinder
getRasterPoints(int, int) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Cylinder
getRasterPoints(int) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Edge
getRasterPoints(int) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Ellipsoid
getRasterPoints(int) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Plane3D
getRasterPoints(int) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.QuadricSurface
getRasterPoints(int, int) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.SimpleSurface
getRasterPoints(int) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Sphere
getRasterPoints(int, int) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Sphere
getRasterPoints(int) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.StraightLine
getRasterPoints(int) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Triangle
getRasterPoints(int) - Method in class edu.stanford.rsl.conrad.geometry.splines.BSpline
getRasterPoints(int) - Method in class edu.stanford.rsl.conrad.geometry.splines.SurfaceBSpline
getRasterPoints(double, double) - Method in class edu.stanford.rsl.conrad.geometry.splines.SurfaceBSpline
getRasterPoints(double, double, double) - Method in class edu.stanford.rsl.conrad.geometry.splines.TimeVariantSurfaceBSpline
getRasterPoints(int) - Method in class edu.stanford.rsl.conrad.geometry.splines.TimeVariantSurfaceBSpline
getRasterPoints(int, double) - Method in class edu.stanford.rsl.conrad.geometry.splines.TimeVariantSurfaceBSpline
getRate() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.IRRFilter
getRawDataOpener() - Static method in class edu.stanford.rsl.apps.gui.RawDataOpener
getReal() - Method in class edu.stanford.rsl.conrad.data.Complex
getRealAtIndex(int) - Method in class edu.stanford.rsl.conrad.data.Grid1DComplex
getRealAtIndex(int, int) - Method in class edu.stanford.rsl.conrad.data.Grid2DComplex
getRealSubGrid(int, int) - Method in class edu.stanford.rsl.conrad.data.Grid1DComplex
getRealSubGrid(int, int, int, int) - Method in class edu.stanford.rsl.conrad.data.Grid2DComplex
getRealtime() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getRecentFileOne() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getRecentFileTwo() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getreciprocalS() - Method in class edu.stanford.rsl.conrad.numerics.DecompositionSVD: Return the diagonal matrix of the reciprocals of the singular values
getReconDimensions() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getReconDimensionX() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getReconDimensionY() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getReconDimensionZ() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getReconVoxelSizes() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getReferenceImage() - Method in class edu.stanford.rsl.conrad.metric.ImageMetric
getReferenceThreeDPoints() - Method in class edu.stanford.rsl.apps.gui.blobdetection.MarkerDetectionWorker
getReferenceTwoDPoints() - Method in class edu.stanford.rsl.apps.gui.blobdetection.MarkerDetectionWorker
getRegistry() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getRegistryEntry(String) - Method in class edu.stanford.rsl.conrad.utils.Configuration: Reads a key from the registry.
getRegistryKeys() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getRenderInstance() - Static method in class edu.stanford.rsl.conrad.opencl.OpenCLUtil
getRespiratoryMotionField() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getRespiratoryMotionFieldEntry(int) - Method in class edu.stanford.rsl.conrad.utils.Configuration
getRestPhase() - Method in class edu.stanford.rsl.conrad.geometry.motion.timewarp.RestPhaseTimeWarper
getResult() - Method in class edu.stanford.rsl.conrad.io.ImagePlusDataSink
getResult() - Method in class edu.stanford.rsl.conrad.io.IndividualFilesProjectionDataSink
getResult() - Method in class edu.stanford.rsl.conrad.pipeline.BufferedProjectionSink
getResult() - Method in class edu.stanford.rsl.conrad.volume3d.operations.ParallelVolumeOperation
getResultEnum(int) - Static method in class edu.stanford.rsl.conrad.cuda.CUDAFFTVolumeHandle
getRi() - Method in class edu.stanford.rsl.conrad.volume3d.operations.InitializeSquaredCosineR
getRingState(int) - Method in class edu.stanford.rsl.conrad.phantom.electrondensity.CrisEDPhantomM062
getRipple() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.IRRFilter
getRoi() - Method in class edu.stanford.rsl.apps.gui.roi.EvaluateROI
getRoiHeightBottom() - Static method in class edu.stanford.rsl.conrad.filtering.multiprojection.DiaphragmTrackingTool
getRoiHeightBottom() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getRoiHeightBottomMax() - Static method in class edu.stanford.rsl.conrad.filtering.multiprojection.DiaphragmTrackingTool
getRoiHeightTop() - Static method in class edu.stanford.rsl.conrad.filtering.multiprojection.DiaphragmTrackingTool
getRoiHeightTop() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getRoiHeightTopMax() - Static method in class edu.stanford.rsl.conrad.filtering.multiprojection.DiaphragmTrackingTool
getRoiWidthHalf() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getRoiWidthHalfMax() - Static method in class edu.stanford.rsl.conrad.filtering.multiprojection.DiaphragmTrackingTool
getRoiWidthLeft() - Static method in class edu.stanford.rsl.conrad.filtering.multiprojection.DiaphragmTrackingTool
getRoiWidthRight() - Static method in class edu.stanford.rsl.conrad.filtering.multiprojection.DiaphragmTrackingTool
getRotationAxis() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getRotationFromAtoB(SimpleVector, SimpleVector) - Static method in class edu.stanford.rsl.conrad.geometry.Rotations: Computes the angle (in radians) of the rotation from a to b (in the plane that is defined by (0,0,0), a, b).
getRotationMatrixFromAtoB(SimpleVector, SimpleVector) - Static method in class edu.stanford.rsl.conrad.geometry.Rotations: Computes the rotation matrix from a to b.
getRow(int) - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix: Retrieve row from index row of matrix
getRows() - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix
getRt() - Method in class edu.stanford.rsl.conrad.geometry.Projection: Returns all extrinsic parameters (R and t) in a homogeneous rigid motion matrix.
getRTKinv() - Method in class edu.stanford.rsl.conrad.geometry.Projection
getS() - Method in class edu.stanford.rsl.conrad.geometry.Projection: Returns a const reference to the scaling.
getS() - Method in class edu.stanford.rsl.conrad.numerics.DecompositionSVD: Return the diagonal matrix of singular values
getSamplingStep() - Method in class edu.stanford.rsl.conrad.geometry.splines.MotionDefectTimeVariantSurfaceBSpline
getSamplingU(AbstractSurface, double) - Static method in class edu.stanford.rsl.conrad.utils.TessellationUtil: Method to estimate a good sampling factor given the voxel size and the size of the volume that is used for discretization.
getSamplingV(AbstractSurface, double) - Static method in class edu.stanford.rsl.conrad.utils.TessellationUtil: Method to estimate a good sampling factor given the voxel size and the size of the volume that is used for discretization.
getScalar1() - Method in class edu.stanford.rsl.conrad.volume3d.operations.ParallelVolumeOperation
getScalar2() - Method in class edu.stanford.rsl.conrad.volume3d.operations.ParallelVolumeOperation
getScale() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.SheppLoganRampFilterWithRollOff
getScaler() - Method in class edu.stanford.rsl.conrad.geometry.transforms.Quaternion
getScatterEstScale() - Method in class edu.stanford.rsl.conrad.filtering.PrimaryModulationScatterCorrectionTool
getScene(double, double, double, double, double, double) - Method in class edu.stanford.rsl.conrad.phantom.AnalyticPhantom4D: Creates the scene at time t given the sampling factors.
getScene() - Method in class edu.stanford.rsl.conrad.phantom.forbild.ForbildParser
getScene(double, double, double, double, double, double) - Method in class edu.stanford.rsl.conrad.phantom.MovingBallPhantom
getScene(double, double, double, double, double, double) - Method in class edu.stanford.rsl.conrad.phantom.xcat.XCatScene
getScene() - Method in class edu.stanford.rsl.conrad.rendering.AbstractRayTracer
getScene() - Method in interface edu.stanford.rsl.conrad.utils.parsers.SceneFileParser
getSceneFileParser(String) - Static method in class edu.stanford.rsl.conrad.utils.parsers.ParserFactory
getSceneMotion(int, ArrayList<ArrayList<PointND>>, int) - Method in class edu.stanford.rsl.conrad.phantom.xcat.WholeBodyScene: Creates a motion field from the scene motion plus a sequence of points in time.
getSecondaryAngles() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getSecondaryAnglesString() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getSeedX() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getSeedY() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getShape(String) - Static method in class edu.stanford.rsl.conrad.phantom.forbild.ForbildShapeFactory: Determines AbstractShape specified by given bound expressions
getShape() - Method in class edu.stanford.rsl.conrad.physics.PhysicalObject
getSigma() - Method in class edu.stanford.rsl.conrad.filtering.DynamicDensityOptimizationScatterCorrectionTool
getSigma() - Method in class edu.stanford.rsl.conrad.fitting.GaussianFunction
getSigma() - Method in class edu.stanford.rsl.conrad.volume3d.operations.InitializeGaussian
getSingularValues() - Method in class edu.stanford.rsl.conrad.numerics.DecompositionSVD: Return the one-dimensional array of singular values
getSink() - Method in class edu.stanford.rsl.conrad.pipeline.IndividualImagePipelineFilteringTool
getSink() - Method in class edu.stanford.rsl.conrad.pipeline.ParallelProjectionDataSinkFeeder
getSink() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getSize() - Method in class edu.stanford.rsl.conrad.calibration.CalibrationBead
getSize() - Method in class edu.stanford.rsl.conrad.data.Grid
getSize() - Method in class edu.stanford.rsl.conrad.data.Grid1DComplex
getSize() - Method in class edu.stanford.rsl.conrad.data.Grid2DComplex
getSliceWorker() - Method in interface edu.stanford.rsl.conrad.utils.parsers.SliceWorkerParser
getSlope() - Method in class edu.stanford.rsl.conrad.phantom.renderer.RampProjectionPhantomRenderer
getSmallestDevice() - Static method in class edu.stanford.rsl.conrad.cuda.CUDAUtil
getSmallGradientThreshold() - Method in class edu.stanford.rsl.conrad.filtering.FastRadialSymmetryTool
getSmoothness() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.AnisotropicStructureTensorNoiseFilter
getSnapshotPixels() - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor
getSoftcutfactor() - Method in class edu.stanford.rsl.conrad.filtering.PrimaryModulationScatterCorrectionTool
getSortIndex() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.SortablePoint
getSourceActions(JComponent) - Method in class edu.stanford.rsl.apps.gui.FileTextFieldTransferHandler: These text fields handle both copy and move actions.
getSourceToAxisDistance() - Method in class edu.stanford.rsl.conrad.filtering.CosineWeightingTool
getSourceToAxisDistance() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.RampFilter
getSourceToAxisDistance() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getSourceToDetectorDistance() - Method in class edu.stanford.rsl.conrad.filtering.CosineWeightingTool
getSourceToDetectorDistance() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.RampFilter
getSourceToDetectorDistance() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.ParkerWeightingTool
getSourceToDetectorDistance() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getSpacing() - Method in class edu.stanford.rsl.conrad.data.Grid
getSplineNameMaterialNameLUT() - Static method in class edu.stanford.rsl.conrad.phantom.xcat.XCatScene: The lookup table for materials according to the spline names.
getSplinePriorityLUT() - Static method in class edu.stanford.rsl.conrad.phantom.xcat.XCatScene: Look up table for the priorites of the different shapes.
getSplines() - Method in class edu.stanford.rsl.conrad.geometry.splines.TimeVariantSurfaceBSpline
getSplines() - Method in class edu.stanford.rsl.conrad.phantom.xcat.CoronaryScene
getSplines() - Method in class edu.stanford.rsl.conrad.phantom.xcat.HeartScene
getSplines() - Method in class edu.stanford.rsl.conrad.phantom.xcat.XCatScene: returns the geometric definition of XCat.
getStack() - Method in class edu.stanford.rsl.conrad.phantom.renderer.RampProjectionPhantomRenderer
getStandardDeviation(ArrayList<PointND>) - Static method in class edu.stanford.rsl.conrad.utils.DoublePrecisionPointUtil: Compute the standard deviation of a set of points
getStandardNumberFormat() - Static method in class edu.stanford.rsl.conrad.utils.Configuration
getStart() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.SheppLoganRampFilterWithRollOff
getStringArrayRepresentation(ImagePlus[]) - Static method in class edu.stanford.rsl.conrad.utils.ImageUtil: Creates a unigue String representation of an array of ImagePlus
getSubCol(int, int, int) - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix: Returns a vector containing a sub column in current matrix.
getSubGrid(int, int) - Method in class edu.stanford.rsl.conrad.data.Grid1D: EXPLYCITELY copies the elements requested by the subgrid range and returns the copied values in a new Grid1D.
getSubGrid(int) - Method in class edu.stanford.rsl.conrad.data.Grid2D: Returns the corresponding Grid1D object that points on the linear 2D row memory
getSubGrid(int) - Method in class edu.stanford.rsl.conrad.data.Grid3D
getSubMatrix(int, int, int, int) - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix: Creates a new sub matrix of this matrix
getSubMatrix(int[], int[]) - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix: Creates a new sub matrix with entries from ordered rows and ordered columns provided
getSubMatrix(int, int) - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix
getSubPipeline(ImageFilteringTool[], int, int) - Static method in class edu.stanford.rsl.conrad.pipeline.ParallelImageFilterPipeliner
getSubRow(int, int, int) - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix: Returns a vector containing a sub row in current matrix.
getSubVec(int, int) - Method in class edu.stanford.rsl.conrad.numerics.SimpleVector
getSuccess() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.DennerleinProjectionTableFileTrajectory
getSuccess() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.ProjectionTableFileTrajectory
getSuccess() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.SystemGeometryConfigFileTrajectory
getSuccess() - Method in class edu.stanford.rsl.conrad.io.BetaConfigFile
getSuccess() - Method in interface edu.stanford.rsl.conrad.io.ConfigFileParser: is true if the reading was successful.
getSuccess() - Method in class edu.stanford.rsl.conrad.io.LUTConfigFile
getSuccess() - Method in class edu.stanford.rsl.conrad.reconstruction.voi.CylinderBasedVolumeOfInterest
getSuccess() - Method in class edu.stanford.rsl.conrad.reconstruction.voi.PolygonBasedVolumeOfInterest
getSum(Quaternion) - Method in class edu.stanford.rsl.conrad.geometry.transforms.Quaternion
getSuperSampledIncidentRays() - Method in class edu.stanford.rsl.conrad.rendering.RayDetector: For anti-aliasing
getSymbol() - Method in class edu.stanford.rsl.conrad.physics.materials.Element: Retrieve the atomic symbol of the element
getSystemMatrixColumn() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.RayDrivenBasedReconstruction
getSystemMatrixColumn() - Method in class edu.stanford.rsl.conrad.reconstruction.RayDrivenBasedReconstruction
getSystemMatrixEntries(int, int, int) - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.RayDrivenBasedReconstruction
getSystemMatrixEntries(int, int, int) - Method in class edu.stanford.rsl.conrad.reconstruction.RayDrivenBasedReconstruction
getSystemMatrixRow() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.RayDrivenBasedReconstruction
getSystemMatrixRow() - Method in class edu.stanford.rsl.conrad.reconstruction.RayDrivenBasedReconstruction
getT() - Method in class edu.stanford.rsl.conrad.fitting.LinearFunction
getT() - Method in class edu.stanford.rsl.conrad.geometry.Projection: Returns a const reference to the translation vector t.
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class edu.stanford.rsl.apps.gui.RegistryEditor.MultilineTableCell
getTestImage() - Method in class edu.stanford.rsl.conrad.metric.ImageMetric
getTex3D() - Method in class edu.stanford.rsl.conrad.cuda.CUDAForwardProjector: Gets the volume to project
getTex3D() - Method in class edu.stanford.rsl.conrad.cuda.CUDAForwardProjectorWithMotion: Gets the volume to project
getTex3D() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLForwardProjector: Gets the volume to project
getTex3D() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLForwardProjectorWithMotion: Gets the volume to project
getTime() - Method in class edu.stanford.rsl.conrad.utils.Configuration: Returns exposure time in [s]
getTime() - Method in class edu.stanford.rsl.conrad.utils.DicomDecoder
getTimeWarper() - Method in interface edu.stanford.rsl.conrad.geometry.motion.MotionField
getTimeWarper() - Method in class edu.stanford.rsl.conrad.geometry.motion.ParzenWindowMotionField
getTimeWarper() - Method in class edu.stanford.rsl.conrad.geometry.motion.PlanarMotionField
getTimeWarper() - Method in class edu.stanford.rsl.conrad.geometry.motion.PointBasedMotionField
getTimeWarper() - Method in class edu.stanford.rsl.conrad.geometry.motion.SimpleMotionField
getTimeWarper() - Method in class edu.stanford.rsl.conrad.phantom.AnalyticPhantom4D
getTimeWarper() - Method in class edu.stanford.rsl.conrad.phantom.xcat.XCatScene
getTitle() - Method in class edu.stanford.rsl.conrad.geometry.splines.SurfaceBSpline
getTitle() - Method in class edu.stanford.rsl.conrad.geometry.splines.TimeVariantSurfaceBSpline
getTitle() - Method in class edu.stanford.rsl.conrad.io.ImagePlusProjectionDataSource
getTitle() - Method in class edu.stanford.rsl.tutorial.phantoms.Phantom
getToolName() - Method in class edu.stanford.rsl.conrad.cuda.CUDABackProjector
getToolName() - Method in class edu.stanford.rsl.conrad.cuda.CUDACompensatedBackProjector
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.AbsoluteValueTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.ApplyHounsfieldScaling
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.ApplyLambdaWeightingTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.AtractResidual2D
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.BilateralFilteringTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.CosineWeightingTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.DynamicDensityOptimizationScatterCorrectionTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.ExtremeValueTruncationFilter
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.FastRadialSymmetryTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.FiducialMarkerDetectionTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.Filtering2DTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.HilbertFilteringTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.HorizontalFlippingTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.HoughFilteringTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.ImageConstantMathFilter
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.ImageFilteringTool: returns the name of the actual tool which was used.
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.ImageJParallelTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.ImageMathFilter
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.KinectBasedDetectorSaturationCorrectionTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.LaplaceFilteringTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.LogPoissonNoiseFilteringTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.MeanFilteringTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.MeanMarkerBasedProjectionShiftingTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.MeanMarkerBasedProjectionShiftingToolForXCAT
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.MedianFilteringTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.AnisotropicStructureTensorNoiseFilter
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.CUDAAnisotropicStructureTensorNoiseFilter
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.CUDAFFTAnisotropicStructureTensorNoiseFilter
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.BilateralFilter3D
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.BlockWiseStructureTensor
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.DiaphragmTrackingTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.IdentityTransformFilter
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.IterativeReconstructionFilter
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.Lambda3DDerivativeFilter
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.ProjectionSortingFilter
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.Triangulation
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.NonLinearGainCorrectionTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.NumericalDerivativeComputationTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.NumericalLinewiseAntiderivativeFilteringTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.PoissonNoiseFilteringTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.PrimaryModulationScatterCorrectionTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.RampFilteringTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.NooWeightingTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.OSCARWeightingTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.ParkerWeightingTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.SilverWeightingTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.TrajectoryParkerWeightingTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.WesargWeightingTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.Rotate90DegreeLeftTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.ThinPlateSplinesBasedProjectionWarpingTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.ThinPlateSplinesBasedProjectionWarpingToolForXCAT
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.TruncationCorrectionTool
getToolName() - Method in class edu.stanford.rsl.conrad.filtering.VolumeAttenuationFactorCorrectionTool
getToolName() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLBackProjector
getToolName() - Method in class edu.stanford.rsl.conrad.pipeline.IndividualImagePipelineFilteringTool: returns the name of the actual tool which was used.
getToolName() - Method in class edu.stanford.rsl.conrad.reconstruction.CPUSuperShortScanBackprojector
getToolName() - Method in class edu.stanford.rsl.conrad.reconstruction.DistanceDrivenBasedReconstruction
getToolName() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.DistanceDrivenBasedReconstruction
getToolName() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.ModelBasedIterativeReconstruction
getToolName() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.RayDrivenBasedReconstruction
getToolName() - Method in class edu.stanford.rsl.conrad.reconstruction.LolaBunnyBackprojector
getToolName() - Method in class edu.stanford.rsl.conrad.reconstruction.ModelBasedIterativeReconstruction
getToolName() - Method in class edu.stanford.rsl.conrad.reconstruction.MotionCompensatedSubVolumeBackprojector
getToolName() - Method in class edu.stanford.rsl.conrad.reconstruction.MotionCompensatedVOIBasedReconstructionFilter
getToolName() - Method in class edu.stanford.rsl.conrad.reconstruction.RayDrivenBasedReconstruction
getToolName() - Method in class edu.stanford.rsl.conrad.reconstruction.RigidBody3DTransformationVOIBasedReconstructionFilter
getToolName() - Method in class edu.stanford.rsl.conrad.reconstruction.RigidBody3DTransformationVOIBasedReconstructionFilterForXCAT
getToolName() - Method in class edu.stanford.rsl.conrad.reconstruction.SimpleIterativeReconstruction
getToolName() - Method in class edu.stanford.rsl.conrad.reconstruction.SubVolumeBackprojector
getToolName() - Method in class edu.stanford.rsl.conrad.reconstruction.VOIBasedReconstructionFilter
getTransform(double, double) - Method in class edu.stanford.rsl.conrad.geometry.motion.AffineMotionField: Returns the interpolated transform between initial time and time.
getTransform(double, double) - Method in class edu.stanford.rsl.conrad.geometry.motion.RotationMotionField: Returns the interpolated transform between initial time and time.
getTransform() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.SimpleSurface: Returns cloned copy of shape's affine transform
getTransformedPoints(ArrayList<PointND>) - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconAffineTransform
getTransformedPoints(PointND) - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconAffineTransform
getU() - Method in class edu.stanford.rsl.conrad.calibration.CalibrationBead
getU() - Method in class edu.stanford.rsl.conrad.numerics.DecompositionSVD: Return the left singular vectors
getuCtrl() - Method in class edu.stanford.rsl.tutorial.motionEstimation.EstimateBSplineSurface: Getter for u-controlpoints
getUKnots() - Method in class edu.stanford.rsl.conrad.geometry.splines.SurfaceBSpline
getUpperbound() - Method in class edu.stanford.rsl.conrad.fitting.ConstrainedRANSACFittedFunction
getUpperTensorLevel() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.AnisotropicStructureTensorNoiseFilter
getUseExtrapolatedGeometry() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getUseHounsfieldScaling() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getUseOrientationOnly() - Method in class edu.stanford.rsl.conrad.filtering.FastRadialSymmetryTool
getUsePositiveNegativeOnly() - Method in class edu.stanford.rsl.conrad.filtering.FastRadialSymmetryTool
getUserHome() - Static method in class edu.stanford.rsl.conrad.utils.CONRAD: CONRAD checks the environment variables for a variable called "CONRAD_HOME".
getV() - Method in class edu.stanford.rsl.conrad.calibration.CalibrationBead
getV() - Method in class edu.stanford.rsl.conrad.numerics.DecompositionSVD: Return the right singular vectors
getValue(int[]) - Method in class edu.stanford.rsl.conrad.data.Grid
getValue(int[]) - Method in class edu.stanford.rsl.conrad.data.Grid1D
getValue(int[]) - Method in class edu.stanford.rsl.conrad.data.Grid2D
getValue(int[]) - Method in class edu.stanford.rsl.conrad.data.Grid3D
getValue(String) - Static method in class edu.stanford.rsl.conrad.numerics.mathexpressions.Evaluator: Evaluates the string literal
getValue(String, Map<String, Double>) - Static method in class edu.stanford.rsl.conrad.numerics.mathexpressions.Evaluator: Evaluates the string literal and replaces variables with values in map;
getValue(double, double) - Method in class edu.stanford.rsl.conrad.utils.BilinearInterpolatingDoubleArray: Interpolate an arbitrary point between the meshes.
getValue(double) - Method in class edu.stanford.rsl.conrad.utils.LinearInterpolatingDoubleArray: Interpolated the value at meshPoint from the given array.
getValues() - Method in class edu.stanford.rsl.conrad.utils.LinearInterpolatingDoubleArray
getVariant() - Method in class edu.stanford.rsl.conrad.geometry.motion.TimeVariantSurfaceBSplineMotionField
getVariants() - Method in class edu.stanford.rsl.conrad.geometry.motion.MixedSurfaceBSplineMotionField
getVariants() - Method in class edu.stanford.rsl.conrad.geometry.motion.TimeVariantSurfaceBSplineListMotionField
getVariants() - Method in class edu.stanford.rsl.conrad.phantom.xcat.DynamicSquatScene
getVariants() - Method in class edu.stanford.rsl.conrad.phantom.xcat.XCatScene
getvCtrl() - Method in class edu.stanford.rsl.tutorial.motionEstimation.EstimateBSplineSurface: Getter for number of v-controlpoints
getVector() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.VectorPoint3D
getVectorSerialization() - Method in class edu.stanford.rsl.conrad.numerics.SimpleVector
getVectorValue(String) - Static method in class edu.stanford.rsl.conrad.numerics.mathexpressions.Evaluator: Evaluates the string literals in a string vector;
getVectorValue(String, Map<String, Double>) - Static method in class edu.stanford.rsl.conrad.numerics.mathexpressions.Evaluator: Evaluates the string literals in a string vector and replaces variables with values in map;
getVICONMarkers() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
getViewingDirection() - Method in class edu.stanford.rsl.conrad.geometry.Projection: Returns the viewing direction of the camera with respect to the z axis of the camera coordinate system The viewing direction can be either in positive or negative $%preamble{\usepackage{amsmath}} $z_\text{C}$$ direction.
getVKnots() - Method in class edu.stanford.rsl.conrad.geometry.splines.SurfaceBSpline
getVol() - Method in class edu.stanford.rsl.conrad.volume3d.operations.ParallelVolumeOperation
getVol1() - Method in class edu.stanford.rsl.conrad.volume3d.operations.ParallelVolumeOperation
getVol2() - Method in class edu.stanford.rsl.conrad.volume3d.operations.ParallelVolumeOperation
getVoltage() - Method in class edu.stanford.rsl.conrad.utils.Configuration: returns the voltage in [kV]
getVoltage() - Method in class edu.stanford.rsl.conrad.utils.DicomDecoder
getvolumeImage() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.ModelBasedIterativeReconstruction
getVolumeOfInterestFileName() - Method in class edu.stanford.rsl.conrad.utils.Configuration
getVolumeOperator() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.AnisotropicFilterFunction: Returns the VolumeOperator of the filter.
getVolumes(ImagePlus, long[]) - Method in class edu.stanford.rsl.apps.gui.blobdetection.ConnectedComponent3D
getVolumes() - Static method in class edu.stanford.rsl.conrad.reconstruction.voi.VolumeOfInterest: Reports a list of all known implementations of VolumeOfInterest.
getVoxelSpacingX() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getVoxelSpacingY() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getVoxelSpacingZ() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory
getWeight() - Method in class edu.stanford.rsl.conrad.filtering.DynamicDensityOptimizationScatterCorrectionTool
getWeight(double, int) - Method in class edu.stanford.rsl.conrad.geometry.splines.BSpline: Computes N iteratively.
getWeightedAtomicComposition() - Method in class edu.stanford.rsl.conrad.physics.materials.Material: Retrieve the atomic composition of material by mass
getWeights(double) - Static method in class edu.stanford.rsl.conrad.geometry.splines.UniformCubicBSpline
getWidth() - Method in class edu.stanford.rsl.conrad.data.Grid2D: Gets the grid's width
getWidth() - Method in class edu.stanford.rsl.conrad.io.IndividualFilesProjectionDataSink
getWidth() - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor
getWidth() - Method in class edu.stanford.rsl.conrad.phantom.renderer.RampProjectionPhantomRenderer: returns the width
getWidthInPixels() - Method in class edu.stanford.rsl.conrad.rendering.RayDetector
getWorkerFromString(String) - Static method in class edu.stanford.rsl.conrad.phantom.renderer.MetricPhantomRenderer: Method to select a worker given it's String representation
getWorkerFromString(String) - Static method in class edu.stanford.rsl.conrad.phantom.workers.SliceWorker: Method to select a worker given it's String representation
getWorkload() - Static method in class edu.stanford.rsl.conrad.filtering.multiprojection.DiaphragmTrackingTool
getX() - Method in class edu.stanford.rsl.conrad.calibration.CalibrationBead
getX() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Point2D: returns the x coordinate
getX() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Point3D: returns the x coordinate
getY() - Method in class edu.stanford.rsl.conrad.calibration.CalibrationBead
getY() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Point2D: returns the y coordinate
getY() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Point3D: returns the y coordinate
getYXDrawInstance() - Static method in class edu.stanford.rsl.conrad.opencl.OpenCLUtil
getZ() - Method in class edu.stanford.rsl.conrad.calibration.CalibrationBead
getZ() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Point3D: returns the z coordinate
getZero(int) - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.IRRFilter
getZeroValue() - Method in class edu.stanford.rsl.conrad.filtering.AtractResidual2D
giveRandomAngle(double[]) - Method in class edu.stanford.rsl.conrad.phantom.BeadRemovalPhantom
giveRandomZBeadPosition(double[]) - Method in class edu.stanford.rsl.conrad.phantom.BeadRemovalPhantom
GLCLInteroperabilityDemo - Class in edu.stanford.rsl.conrad.opencl.GLCLDemo: JOCL - JOGL interoperability example.
GLCLInteroperabilityDemo() - Constructor for class edu.stanford.rsl.conrad.opencl.GLCLDemo.GLCLInteroperabilityDemo
goldEnergies - Static variable in class edu.stanford.rsl.conrad.physics.EnergyDependentCoefficients: Deprecated.

Energies [Mev] at which the coefficients were meassured.
goldMuEnOverRho - Static variable in class edu.stanford.rsl.conrad.physics.EnergyDependentCoefficients: Deprecated.

mass energy-absorption coefficient (mu_\text{en}/rho) in [cm^2/g]
goldMuOverRho - Static variable in class edu.stanford.rsl.conrad.physics.EnergyDependentCoefficients: Deprecated.

Photon mass attenuation coefficients (mu/rho) in [cm^2/g]
Grid - Class in edu.stanford.rsl.conrad.data: The Grid*D classes are to be used as wrappers for already allocated float buffers.
Grid() - Constructor for class edu.stanford.rsl.conrad.data.Grid
Grid1D - Class in edu.stanford.rsl.conrad.data: The one-dimensional version of a Grid.
Grid1D(int) - Constructor for class edu.stanford.rsl.conrad.data.Grid1D
Grid1D(float[], int, int) - Constructor for class edu.stanford.rsl.conrad.data.Grid1D
Grid1D(float[]) - Constructor for class edu.stanford.rsl.conrad.data.Grid1D
Grid1D(Grid1D) - Constructor for class edu.stanford.rsl.conrad.data.Grid1D
Grid1DComplex - Class in edu.stanford.rsl.conrad.data: Class to use complex numbers in a grid structure.
Grid1DComplex(int) - Constructor for class edu.stanford.rsl.conrad.data.Grid1DComplex
Grid1DComplex(int, boolean) - Constructor for class edu.stanford.rsl.conrad.data.Grid1DComplex
Grid1DComplex(Grid1D) - Constructor for class edu.stanford.rsl.conrad.data.Grid1DComplex
Grid1DComplex(Grid1D, boolean) - Constructor for class edu.stanford.rsl.conrad.data.Grid1DComplex
Grid1DComplex(Grid1DComplex) - Constructor for class edu.stanford.rsl.conrad.data.Grid1DComplex
Grid1DComplex(Grid1DComplex, boolean) - Constructor for class edu.stanford.rsl.conrad.data.Grid1DComplex
Grid2D - Class in edu.stanford.rsl.conrad.data: The two-dimensional version of a Grid.
Grid2D(int, int) - Constructor for class edu.stanford.rsl.conrad.data.Grid2D
Grid2D(float[], int[]) - Constructor for class edu.stanford.rsl.conrad.data.Grid2D
Grid2D(float[], int, int) - Constructor for class edu.stanford.rsl.conrad.data.Grid2D
Grid2D(Grid2D) - Constructor for class edu.stanford.rsl.conrad.data.Grid2D
Grid2DComplex - Class in edu.stanford.rsl.conrad.data: Class to use complex numbers in a grid structure.
Grid2DComplex(int, int) - Constructor for class edu.stanford.rsl.conrad.data.Grid2DComplex
Grid2DComplex(int, int, boolean) - Constructor for class edu.stanford.rsl.conrad.data.Grid2DComplex
Grid2DComplex(Grid2D, boolean) - Constructor for class edu.stanford.rsl.conrad.data.Grid2DComplex
Grid2DComplex(Grid2D) - Constructor for class edu.stanford.rsl.conrad.data.Grid2DComplex
Grid2DComplex(Grid2DComplex) - Constructor for class edu.stanford.rsl.conrad.data.Grid2DComplex
Grid3D - Class in edu.stanford.rsl.conrad.data: The three-dimensional version of a Grid.
Grid3D(int, int, int) - Constructor for class edu.stanford.rsl.conrad.data.Grid3D: Constructor that directly allocates the Memory
Grid3D(int, int, int, boolean) - Constructor for class edu.stanford.rsl.conrad.data.Grid3D: Constructor does not allocate the Memory but saves the size
Grid3D(Grid3D) - Constructor for class edu.stanford.rsl.conrad.data.Grid3D
gridBlockSize - Static variable in class edu.stanford.rsl.conrad.cuda.CUDAUtil
GridKernel - Interface in edu.stanford.rsl.tutorial: Interface to describe a kernel that is applied row-wise to a sinogram.
GUICompatibleObjectVisualizationPanel - Class in edu.stanford.rsl.apps.gui: This code was edited or generated using CloudGarden's Jigloo SWT/Swing GUI Builder, which is free for non-commercial use.
GUICompatibleObjectVisualizationPanel(ImageFilteringTool) - Constructor for class edu.stanford.rsl.apps.gui.GUICompatibleObjectVisualizationPanel
GUICompatibleObjectVisualizationPanel(GUIConfigurable, Citeable) - Constructor for class edu.stanford.rsl.apps.gui.GUICompatibleObjectVisualizationPanel
GUICompatibleObjectVisualizationPanel(BufferedProjectionSink) - Constructor for class edu.stanford.rsl.apps.gui.GUICompatibleObjectVisualizationPanel
GUIConfigurable - Interface in edu.stanford.rsl.apps.gui: Interface to model configuration via a graphical user interface.
GUIUtil - Class in edu.stanford.rsl.conrad.utils
GUIUtil() - Constructor for class edu.stanford.rsl.conrad.utils.GUIUtil
GZIP - Static variable in class edu.stanford.rsl.conrad.io.FlexibleFileOpener
GZIP - Static variable in class edu.stanford.rsl.conrad.io.NrrdFileInfo

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