- A0_Mo - Static variable in class edu.stanford.rsl.conrad.physics.Constants
-
Bremsstrahlung
photons/electron [3.033E-2] (3.0e-2)
- A0_W - Static variable in class edu.stanford.rsl.conrad.physics.Constants
-
Bremsstrahlung
photons/electron [3.685E-2] (3.90e-2 for R2)
- A1_Mo - Static variable in class edu.stanford.rsl.conrad.physics.Constants
-
Bremsstrahlung
photons/(electron keV) [-7.494E-5] (-6.2e-5)
- A1_W - Static variable in class edu.stanford.rsl.conrad.physics.Constants
-
Bremsstrahlung
photons/(electron keV) [2.900E-5] (2.30e-5 for R2)
- aAIR - Static variable in class edu.stanford.rsl.conrad.physics.Constants
-
- aAl - Static variable in class edu.stanford.rsl.conrad.physics.Constants
-
Mass attenuation coefficients for Aluminium
- abs(Volume3D) - Method in class edu.stanford.rsl.conrad.cuda.CUDAVolumeOperator
-
- abs(Grid) - Static method in class edu.stanford.rsl.conrad.data.PointwiseOperators
-
- abs() - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor
-
- abs(int, double[]) - Static method in class edu.stanford.rsl.conrad.utils.FFTUtil
-
Computes the absolute value of the complex number at position pos in the array
- abs(int, int, double[][]) - Static method in class edu.stanford.rsl.conrad.utils.FFTUtil
-
Computes the absolute values of the complex number at posx, posy in the 2D array array.
- abs(Volume3D) - Method in class edu.stanford.rsl.conrad.volume3d.ParallelVolumeOperator
-
- abs(Volume3D) - Method in class edu.stanford.rsl.conrad.volume3d.VolumeOperator
-
Determines the absolute volume of the input volume.
If the input volume is real Math.abs() is called for each element.
If the input volume is complex the power spectrum is computed.
- absolute() - Method in class edu.stanford.rsl.conrad.numerics.SimpleVector
-
- absoluted() - Method in class edu.stanford.rsl.conrad.numerics.SimpleVector
-
- AbsoluteValueTool - Class in edu.stanford.rsl.conrad.filtering
-
- AbsoluteValueTool() - Constructor for class edu.stanford.rsl.conrad.filtering.AbsoluteValueTool
-
- AbsorptionModel - Class in edu.stanford.rsl.conrad.physics.absorption
-
Creates a absorption model for the projection
- AbsorptionModel() - Constructor for class edu.stanford.rsl.conrad.physics.absorption.AbsorptionModel
-
- AbstractBoundingCondition - Class in edu.stanford.rsl.conrad.geometry.bounds
-
Abstract implementation of a bounding condition.
- AbstractBoundingCondition() - Constructor for class edu.stanford.rsl.conrad.geometry.bounds.AbstractBoundingCondition
-
- AbstractCurve - Class in edu.stanford.rsl.conrad.geometry
-
Abstract class to model n dimensional curves.
- AbstractCurve() - Constructor for class edu.stanford.rsl.conrad.geometry.AbstractCurve
-
- AbstractMathExpression - Class in edu.stanford.rsl.conrad.numerics.mathexpressions
-
Class to model Mathematical Expressions
- AbstractMathExpression() - Constructor for class edu.stanford.rsl.conrad.numerics.mathexpressions.AbstractMathExpression
-
- AbstractRayTracer - Class in edu.stanford.rsl.conrad.rendering
-
Abstract Class to model a ray caster.
- AbstractRayTracer() - Constructor for class edu.stanford.rsl.conrad.rendering.AbstractRayTracer
-
- AbstractScene - Class in edu.stanford.rsl.conrad.rendering
-
Abstract Container for Scenes.
- AbstractScene() - Constructor for class edu.stanford.rsl.conrad.rendering.AbstractScene
-
- AbstractShape - Class in edu.stanford.rsl.conrad.geometry
-
Class to model any kind of curve or surface.
- AbstractShape() - Constructor for class edu.stanford.rsl.conrad.geometry.AbstractShape
-
- AbstractSurface - Class in edu.stanford.rsl.conrad.geometry
-
Abstract class to model n dimensional surfaces.
- AbstractSurface() - Constructor for class edu.stanford.rsl.conrad.geometry.AbstractSurface
-
- accept(File) - Method in class edu.stanford.rsl.conrad.utils.StringFileFilter
-
- AcrylicCTValue - Static variable in class edu.stanford.rsl.conrad.physics.Constants
-
- actionPerformed(ActionEvent) - Method in class edu.stanford.rsl.apps.gui.blobdetection.MarkerDetection
-
- actionPerformed(ActionEvent) - Method in class edu.stanford.rsl.apps.gui.ConfigurationFrame
-
- actionPerformed(ActionEvent) - Method in class edu.stanford.rsl.apps.gui.ConfigurePipelineFrame
-
- actionPerformed(ActionEvent) - Method in class edu.stanford.rsl.apps.gui.Experimenter
-
- actionPerformed(ActionEvent) - Method in class edu.stanford.rsl.apps.gui.ExperimentPanel
-
- actionPerformed(ActionEvent) - Method in class edu.stanford.rsl.apps.gui.GUICompatibleObjectVisualizationPanel
-
- actionPerformed(ActionEvent) - Method in class edu.stanford.rsl.apps.gui.pointselector.PointSelector
-
- actionPerformed(ActionEvent) - Method in class edu.stanford.rsl.apps.gui.RawDataOpener
-
- actionPerformed(ActionEvent) - Method in class edu.stanford.rsl.apps.gui.ReconstructionPipelineFrame
-
- actionPerformed(ActionEvent) - Method in class edu.stanford.rsl.apps.gui.RegistryEditor
-
- actionPerformed(ActionEvent) - Method in class edu.stanford.rsl.conrad.phantom.electrondensity.CrisEDPhantomGUI
-
- add(Complex) - Method in class edu.stanford.rsl.conrad.data.Complex
-
- add(double) - Method in class edu.stanford.rsl.conrad.data.Complex
-
- ADD - Static variable in class edu.stanford.rsl.conrad.filtering.ImageConstantMathFilter
-
- ADD - Static variable in class edu.stanford.rsl.conrad.filtering.ImageMathFilter
-
- add(AbstractShape) - Method in class edu.stanford.rsl.conrad.geometry.shapes.compound.CompoundShape
-
- add(AbstractShape) - Method in class edu.stanford.rsl.conrad.geometry.shapes.compound.LinearOctree
-
- add(int) - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor
-
- add(double) - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor
-
- add(double) - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix
-
Add addend to all entries in matrix in place
- add(SimpleMatrix...) - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix
-
Method to add a set of matrices to this matrix in place.
- add(SimpleVector...) - Static method in class edu.stanford.rsl.conrad.numerics.SimpleOperators
-
Computes the sum of supplied vectors
- add(SimpleMatrix...) - Static method in class edu.stanford.rsl.conrad.numerics.SimpleOperators
-
Computes the sum of provided matrices
- add(double) - Method in class edu.stanford.rsl.conrad.numerics.SimpleVector
-
Method to add a scalar to this vector in place.
- add(SimpleVector...) - Method in class edu.stanford.rsl.conrad.numerics.SimpleVector
-
Method to add other vectors to this vector in place.
- add(String, double) - Method in class edu.stanford.rsl.conrad.physics.materials.utils.WeightedAtomicComposition
-
Add an element to table.
- add(String, double) - Method in class edu.stanford.rsl.conrad.physics.materials.WeightedAtomicComposition
-
Add an element to table.
- add(double, double) - Method in class edu.stanford.rsl.conrad.physics.PolychromaticXRaySpectrum
-
- add(PhysicalObject) - Method in class edu.stanford.rsl.conrad.rendering.PrioritizableScene
-
- add(PhysicalObject, boolean) - Method in class edu.stanford.rsl.conrad.rendering.PrioritizableScene
-
- add(PhysicalObject, int) - Method in class edu.stanford.rsl.conrad.rendering.PrioritizableScene
-
This method is always called if an object is added to the scene.
- add(PhysicalObject) - Method in class edu.stanford.rsl.conrad.rendering.SimpleScene
-
- add(double[], double[]) - Static method in class edu.stanford.rsl.conrad.utils.DoubleArrayUtil
-
Adds one array to the first array
- add(double[], double) - Static method in class edu.stanford.rsl.conrad.utils.DoubleArrayUtil
-
Adds a constant to the first array
- add(float[], float[]) - Static method in class edu.stanford.rsl.conrad.utils.FloatArrayUtil
-
Adds one array to the first array
- add(float[], float) - Static method in class edu.stanford.rsl.conrad.utils.FloatArrayUtil
-
Adds a constant to the first array
- add(Grid2D, int) - Method in class edu.stanford.rsl.conrad.utils.ImageProcessorBuffer
-
adds the Image at index i; Previous entry will be overwritten.
- ADD_HIGHEST_PRIORITY - Static variable in class edu.stanford.rsl.conrad.rendering.PrioritizableScene
-
- ADD_LOWEST_PRIORITY - Static variable in class edu.stanford.rsl.conrad.rendering.PrioritizableScene
-
- addAll(Collection<? extends AbstractShape>) - Method in class edu.stanford.rsl.conrad.geometry.shapes.compound.CompoundShape
-
- addAll(Collection<? extends AbstractShape>) - Method in class edu.stanford.rsl.conrad.geometry.shapes.compound.LinearOctree
-
- addAll(Collection<? extends PhysicalObject>) - Method in class edu.stanford.rsl.conrad.rendering.PrioritizableScene
-
- addAll(PrioritizableScene) - Method in class edu.stanford.rsl.conrad.rendering.PrioritizableScene
-
- addAll(Collection<? extends PhysicalObject>) - Method in class edu.stanford.rsl.conrad.rendering.SimpleScene
-
- addAllBoundingConditions(Collection<? extends AbstractBoundingCondition>) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.SimpleSurface
-
Adds a collection of bounding conditions
- addAtIndex(int, float) - Method in class edu.stanford.rsl.conrad.data.Grid1D
-
- addAtIndex(int, float) - Method in class edu.stanford.rsl.conrad.data.Grid1DComplex
-
- addAtIndex(int, int, float) - Method in class edu.stanford.rsl.conrad.data.Grid2D
-
- addAtIndex(int, int, float) - Method in class edu.stanford.rsl.conrad.data.Grid2DComplex
-
- addAtIndex(int, int, int, float) - Method in class edu.stanford.rsl.conrad.data.Grid3D
-
- addBoundingCondition(AbstractBoundingCondition) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.SimpleSurface
-
Adds a bounding condition to the top of the "stack".
- addBoundingCondition(AbstractBoundingCondition) - Method in class edu.stanford.rsl.conrad.phantom.electrondensity.QuadricDisk
-
Add additional bounding conditions to disk.
- addBy(Grid, Grid) - Static method in class edu.stanford.rsl.conrad.data.PointwiseOperators
-
Compute grid1 = grid1 - grid2
- addBy(Grid, float) - Static method in class edu.stanford.rsl.conrad.data.PointwiseOperators
-
Compute grid = grid + a
- addedBy(Grid, Grid) - Static method in class edu.stanford.rsl.conrad.data.PointwiseOperators
-
Compute grid3 = grid1 - grid2
- addImagePlusValues(ImagePlus, ImagePlus) - Static method in class edu.stanford.rsl.conrad.utils.ImageUtil
-
Adds the pixel values of all pixels in the ImagePlus by the second Image
- addInsert(Insert, int) - Method in class edu.stanford.rsl.conrad.phantom.electrondensity.EDInnerDisk
-
- addInsert(Insert, int) - Method in class edu.stanford.rsl.conrad.phantom.electrondensity.EDOuterDisk
-
- addInterpolateLinear(Grid1D, double, float) - Static method in class edu.stanford.rsl.conrad.data.InterpolationOperators
-
Linear extrapolation into a 1D Grid
- addInterpolateLinear(Grid2D, double, double, float) - Static method in class edu.stanford.rsl.conrad.data.InterpolationOperators
-
Linear extrapolation into a 2D Grid
- addInterpolateLinear(Grid3D, double, double, double, float) - Static method in class edu.stanford.rsl.conrad.data.InterpolationOperators
-
Linear extrapolation into a 3D Grid
- addProcessors(ImageProcessor, ImageProcessor) - Static method in class edu.stanford.rsl.conrad.utils.ImageUtil
-
Adds two image processors.
- addScalar(Volume3D, float, float) - Method in class edu.stanford.rsl.conrad.cuda.CUDAVolumeOperator
-
- addScalar(Volume3D, float, float) - Method in class edu.stanford.rsl.conrad.volume3d.ParallelVolumeOperator
-
- addScalar(Volume3D, float, float) - Method in class edu.stanford.rsl.conrad.volume3d.VolumeOperator
-
Adds a scalar to the Volume3D.
- AddSlabs - Class in edu.stanford.rsl.conrad.volume3d.operations
-
- AddSlabs() - Constructor for class edu.stanford.rsl.conrad.volume3d.operations.AddSlabs
-
- AddSlabScalar - Class in edu.stanford.rsl.conrad.volume3d.operations
-
- AddSlabScalar() - Constructor for class edu.stanford.rsl.conrad.volume3d.operations.AddSlabScalar
-
- addSlice(Grid2D) - Method in class edu.stanford.rsl.conrad.data.Grid3D
-
- addToElement(int, int, double) - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix
-
Add addend to entry at [row,col] in place
- addToElement(int, double) - Method in class edu.stanford.rsl.conrad.numerics.SimpleVector
-
- addToImagePlusValues(ImagePlus, double) - Static method in class edu.stanford.rsl.conrad.utils.ImageUtil
-
Increases the pixel values of all pixels in the ImagePlus by addition of value
- addUniqueElement(String, double) - Method in class edu.stanford.rsl.conrad.physics.materials.utils.WeightedAtomicComposition
-
To be used if there exists only one instance of element in formula.
- addUniqueElement(String, double) - Method in class edu.stanford.rsl.conrad.physics.materials.WeightedAtomicComposition
-
To be used if there exists only one instance of element in formula.
- addVolume(Volume3D, Volume3D) - Method in class edu.stanford.rsl.conrad.cuda.CUDAVolumeOperator
-
- addVolume(Volume3D, Volume3D, double) - Method in class edu.stanford.rsl.conrad.cuda.CUDAVolumeOperator
-
- addVolume(Volume3D, Volume3D) - Method in class edu.stanford.rsl.conrad.volume3d.ParallelVolumeOperator
-
- addVolume(Volume3D, Volume3D, double) - Method in class edu.stanford.rsl.conrad.volume3d.ParallelVolumeOperator
-
- addVolume(Volume3D, Volume3D) - Method in class edu.stanford.rsl.conrad.volume3d.VolumeOperator
-
Adds the second volume to the first volume.
- addVolume(Volume3D, Volume3D, double) - Method in class edu.stanford.rsl.conrad.volume3d.VolumeOperator
-
Adds the second volume
multiplied by the scalar weight
to the first volume
.
The first volume is overwritten.
- AdjustablePointer - Class in edu.stanford.rsl.conrad.cuda
-
- AdjustablePointer(Pointer, long) - Constructor for class edu.stanford.rsl.conrad.cuda.AdjustablePointer
-
- adjustViewRange() - Method in class edu.stanford.rsl.conrad.pipeline.BufferedProjectionSink
-
- AffineMotionField - Class in edu.stanford.rsl.conrad.geometry.motion
-
MotionField to handle affine rotation and translational motion.
- AffineMotionField(PointND, SimpleVector, double, SimpleVector) - Constructor for class edu.stanford.rsl.conrad.geometry.motion.AffineMotionField
-
Creates a new rotational and translation MotionField.
- AffineMotionField(PointND, SimpleMatrix, SimpleVector) - Constructor for class edu.stanford.rsl.conrad.geometry.motion.AffineMotionField
-
Creates a new rotational and translation MotionField.
- AffineTransform - Class in edu.stanford.rsl.conrad.geometry.transforms
-
Affine Transform Class where y = T(x)= A(x)+ b and x = T^-1(y) = A^-1(y - b)
- AffineTransform(SimpleMatrix, SimpleVector) - Constructor for class edu.stanford.rsl.conrad.geometry.transforms.AffineTransform
-
Initialize a new Affine transform;
- AffineTransform(Transform, Transform) - Constructor for class edu.stanford.rsl.conrad.geometry.transforms.AffineTransform
-
Initialize a new Affine transform
- AIR_mdensity - Static variable in class edu.stanford.rsl.conrad.physics.Constants
-
air mass density (g/cm3)
- airAbsoprtion - Static variable in class edu.stanford.rsl.conrad.physics.EnergyDependentCoefficients
-
Deprecated.
Air absorption coefficients in [cm^2/g]
- AirCTValue - Static variable in class edu.stanford.rsl.conrad.physics.Constants
-
CT Values according to CatPhan Manual
- airEnergies - Static variable in class edu.stanford.rsl.conrad.physics.EnergyDependentCoefficients
-
Deprecated.
Energies [Mev] at which the coefficients were measured.
- Ak_Mo - Static variable in class edu.stanford.rsl.conrad.physics.Constants
-
Characteristic
photons/electron [7.773E-4] (7.90e-4)
- Ak_W - Static variable in class edu.stanford.rsl.conrad.physics.Constants
-
Characteristic
photons/electron [1.349E-3]
- Al_mdensity - Static variable in class edu.stanford.rsl.conrad.physics.Constants
-
aluminum mass density 2.70 (g/cm3)
- aLEX - Static variable in class edu.stanford.rsl.conrad.physics.Constants
-
- align(int, int) - Static method in class edu.stanford.rsl.conrad.cuda.CUDAUtil
-
Returns the given (address) value, adjusted to have
the given alignment.
- allocate() - Method in class edu.stanford.rsl.conrad.data.Grid3D
-
Allocate the memory for all slices
- allocateSpace(Volume3D) - Static method in class edu.stanford.rsl.conrad.cuda.CUDAUtil
-
Allocates space on the CUDA device for a Volume3D
- ALPHA - Static variable in class edu.stanford.rsl.conrad.physics.Constants
-
fine struct const (unitless)
- aluminumEnergies - Static variable in class edu.stanford.rsl.conrad.physics.EnergyDependentCoefficients
-
Deprecated.
Energies [Mev] at which the coefficients were meassured.
- aluminumMuEnOverRho - Static variable in class edu.stanford.rsl.conrad.physics.EnergyDependentCoefficients
-
Deprecated.
mass energy-absorption coefficient (mu_\text{en}/rho) in [cm^2/g]
- aluminumMuOverRho - Static variable in class edu.stanford.rsl.conrad.physics.EnergyDependentCoefficients
-
Deprecated.
Photon mass attenuation coefficients (mu/rho) in [cm^2/g]
- aMoh - Static variable in class edu.stanford.rsl.conrad.physics.Constants
-
- aMol - Static variable in class edu.stanford.rsl.conrad.physics.Constants
-
- AnalyticPhantom - Class in edu.stanford.rsl.conrad.phantom
-
The class AnalyticPhantom defines a scene with different PhysicalObjects, i.e.
- AnalyticPhantom() - Constructor for class edu.stanford.rsl.conrad.phantom.AnalyticPhantom
-
- AnalyticPhantom3DVolumeRenderer - Class in edu.stanford.rsl.conrad.phantom.workers
-
Renders arbitrarily defined phantoms
Works now with the correct origin computations.
- AnalyticPhantom3DVolumeRenderer() - Constructor for class edu.stanford.rsl.conrad.phantom.workers.AnalyticPhantom3DVolumeRenderer
-
- AnalyticPhantom4D - Class in edu.stanford.rsl.conrad.phantom
-
- AnalyticPhantom4D() - Constructor for class edu.stanford.rsl.conrad.phantom.AnalyticPhantom4D
-
- AnalyticPhantomProjector - Class in edu.stanford.rsl.conrad.phantom.renderer
-
will implement a version which streams projections as they are projected.
- AnalyticPhantomProjector() - Constructor for class edu.stanford.rsl.conrad.phantom.renderer.AnalyticPhantomProjector
-
- AnalyticPhantomProjectorWorker - Class in edu.stanford.rsl.conrad.phantom.workers
-
Projects arbitrarily defined phantoms to a detector using ray casting.
The pixel value on the detector is determined by the absorption model.
If you change anything in this class, notify the conrad-dev mailing list.
- AnalyticPhantomProjectorWorker() - Constructor for class edu.stanford.rsl.conrad.phantom.workers.AnalyticPhantomProjectorWorker
-
- and(int) - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor
-
- angle(SimpleVector, SimpleVector) - Static method in class edu.stanford.rsl.conrad.geometry.General
-
Computes the angle between two vectors;
- AnisotropicFilterFunction - Class in edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic
-
Class to process a Volume3D with an anisotropic structure tensor filter.
- AnisotropicFilterFunction(FFTVolumeHandle, VolumeOperator) - Constructor for class edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.AnisotropicFilterFunction
-
- AnisotropicStructureTensorBlock - Class in edu.stanford.rsl.conrad.filtering.multiprojection.blocks
-
Class implements block-wise processing of the anisotropic structure tensor.
- AnisotropicStructureTensorBlock() - Constructor for class edu.stanford.rsl.conrad.filtering.multiprojection.blocks.AnisotropicStructureTensorBlock
-
- AnisotropicStructureTensorNoiseFilter - Class in edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic
-
MultiProjectionFilter which implements an anisotropic structure tensor noise filter.
- AnisotropicStructureTensorNoiseFilter() - Constructor for class edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.AnisotropicStructureTensorNoiseFilter
-
- aOIL - Static variable in class edu.stanford.rsl.conrad.physics.Constants
-
- appendBuffer - Static variable in class edu.stanford.rsl.conrad.opencl.OpenCLUtil
-
- apply2DFilter(Grid2D, Grid2D) - Static method in class edu.stanford.rsl.conrad.utils.FFTUtil
-
Applies a 2D filter to the an ImageProcessor
- applyChangeOfCoordinatesMatrix(SimpleMatrix) - Method in class edu.stanford.rsl.conrad.geometry.CoordinateSystem
-
- applyFilterInParallel(Grid3D, ImageFilteringTool) - Static method in class edu.stanford.rsl.conrad.utils.ImageUtil
-
- applyFiltersInParallel(Grid3D, ImageFilteringTool[]) - Static method in class edu.stanford.rsl.conrad.utils.ImageUtil
-
- ApplyHounsfieldScaling - Class in edu.stanford.rsl.conrad.filtering
-
This Class can be used to apply a previously learned Hounsfield scaling to an existing
reconstruction.
- ApplyHounsfieldScaling() - Constructor for class edu.stanford.rsl.conrad.filtering.ApplyHounsfieldScaling
-
- applyHounsfieldScaling() - Method in class edu.stanford.rsl.conrad.reconstruction.ReconstructionFilter
-
applies the Hounsfield scaling as defined in the current global configuration.
- ApplyLambdaWeightingTool - Class in edu.stanford.rsl.conrad.filtering
-
This class applies the beam hardening correction after Joseph & Spittal in projection domain.
- ApplyLambdaWeightingTool() - Constructor for class edu.stanford.rsl.conrad.filtering.ApplyLambdaWeightingTool
-
- applyRampFilter(Grid2D, RampFilter) - Static method in class edu.stanford.rsl.conrad.utils.FFTUtil
-
Applies a ramp filter to the an ImageProcessor
- applyRampFilter(double[], RampFilter) - Static method in class edu.stanford.rsl.conrad.utils.FFTUtil
-
Applies a ramp filter to the a detector row
- applyRampFilter_ECC(Grid2D, RampFilter) - Static method in class edu.stanford.rsl.conrad.utils.FFTUtil
-
Applies a ramp filter to the an ImageProcessor
- applyTable(int[]) - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor
-
- applyToGrid(Grid2D) - Method in class edu.stanford.rsl.tutorial.atract.AtractFilter1D
-
This method applies laplacian filtering, collimator border removal and atract filtering.
- applyToGrid(Grid2D, Grid2D) - Method in class edu.stanford.rsl.tutorial.atract.AtractFilter1D
-
This method applies laplacian filtering, collimator border removal using a binary mask and atract filtering.
- applyToGrid(Grid1D) - Method in class edu.stanford.rsl.tutorial.atract.AtractKernel1D
-
- applyToGrid(Grid2D) - Method in class edu.stanford.rsl.tutorial.atract.AtractKernel1D
-
- applyToGrid(Grid3D) - Method in class edu.stanford.rsl.tutorial.atract.AtractKernel1D
-
- applyToGrid(Grid1D) - Method in class edu.stanford.rsl.tutorial.atract.AtractKernel1D_test
-
- applyToGrid(Grid2D) - Method in class edu.stanford.rsl.tutorial.atract.AtractKernel1D_test
-
- applyToGrid(Grid3D) - Method in class edu.stanford.rsl.tutorial.atract.AtractKernel1D_test
-
- applyToGrid(Grid2D) - Method in class edu.stanford.rsl.tutorial.atract.AtractKernel2D
-
- applyToGrid(Grid3D) - Method in class edu.stanford.rsl.tutorial.atract.AtractKernel2D
-
- applyToGrid(Grid3D) - Method in class edu.stanford.rsl.tutorial.atract.BorderRemoval2D
-
Use this method in combination with the Laplace2D Filter.
- applyToGrid(Grid2D, int) - Method in class edu.stanford.rsl.tutorial.atract.Kollimator
-
This function collimates an existing projection image stack.
- applyToGrid(Grid3D, int, int) - Method in class edu.stanford.rsl.tutorial.atract.Kollimator
-
This function kollimates an existing projection image stack.
- applyToGrid(Grid1D) - Method in class edu.stanford.rsl.tutorial.atract.LaplaceKernel1D
-
This method implements the Convolution in Fourier Space for a 1-D Grid.
- applyToGrid(Grid2D) - Method in class edu.stanford.rsl.tutorial.atract.LaplaceKernel1D
-
This method implements the Convolution with a 2-D Image by applying the Filter to each 1-D subgrid.
- applyToGrid(Grid3D) - Method in class edu.stanford.rsl.tutorial.atract.LaplaceKernel1D
-
This method implements the Convolution with a 3-D Image by applying the Filter recursively to each 2-D subgrid.
- applyToGrid(Grid2D) - Method in class edu.stanford.rsl.tutorial.atract.LaplaceKernel2D
-
- applyToGrid(Grid3D) - Method in class edu.stanford.rsl.tutorial.atract.LaplaceKernel2D
-
- applyToGrid(Grid2D) - Method in class edu.stanford.rsl.tutorial.cone.ConeBeamCosineFilter
-
- applyToGrid(Grid1D) - Method in class edu.stanford.rsl.tutorial.DerivativeKernel
-
- applyToGrid(Grid1D) - Method in class edu.stanford.rsl.tutorial.fan.CosineFilter
-
- applyToGrid(Grid2D) - Method in class edu.stanford.rsl.tutorial.fan.dynamicCollimation.copyRedundantData
-
- applyToGrid(Grid2D) - Method in class edu.stanford.rsl.tutorial.fan.redundancy.BinaryWeights
-
- applyToGrid(Grid2D) - Method in class edu.stanford.rsl.tutorial.fan.redundancy.BinaryWeights_erodeByOne
-
- applyToGrid(Grid2D) - Method in class edu.stanford.rsl.tutorial.fan.redundancy.BinaryWeights_Normal
-
- applyToGrid(Grid2D) - Method in class edu.stanford.rsl.tutorial.fan.redundancy.CompensationWeights
-
- applyToGrid(Grid2D) - Method in class edu.stanford.rsl.tutorial.fan.redundancy.ParkerWeights
-
- applyToGrid(Grid2D) - Method in class edu.stanford.rsl.tutorial.fan.redundancy.SilverWeights
-
- applyToGrid(Grid1D) - Method in interface edu.stanford.rsl.tutorial.GridKernel
-
Method to apply the kernel to a 1DGrid
- applyToGrid(Grid1D) - Method in class edu.stanford.rsl.tutorial.HilbertKernel
-
- applyToGrid(Grid3D) - Method in class edu.stanford.rsl.tutorial.motionEstimation.CylinderVolumeMask
-
- applyToGrid(Grid3D, int, int, boolean) - Method in class edu.stanford.rsl.tutorial.motionEstimation.CylinderVolumeMask
-
Applies cylinder in a limited z-Range
- applyToGrid(Grid2D) - Method in class edu.stanford.rsl.tutorial.motionEstimation.CylinderVolumeMask
-
- applyToGrid(Grid1D) - Method in class edu.stanford.rsl.tutorial.motionEstimation.SmoothKernel1D
-
This method implements the Convolution in Fourier Space for a 1-D Grid.
- applyToGrid(Grid2D) - Method in class edu.stanford.rsl.tutorial.motionEstimation.SmoothKernel1D
-
This method implements the Convolution with a 2-D Image by applying the Filter to each 1-D subgrid.
- applyToGrid(Grid3D) - Method in class edu.stanford.rsl.tutorial.motionEstimation.SmoothKernel1D
-
This method implements the Convolution with a 3-D Image by applying the Filter recursively to each 2-D subgrid.
- applyToGrid(Grid1D) - Method in class edu.stanford.rsl.tutorial.motionEstimation.SobelKernel1D
-
This method implements the Convolution in Fourier Space for a 1-D Grid.
- applyToGrid(Grid2D) - Method in class edu.stanford.rsl.tutorial.motionEstimation.SobelKernel1D
-
This method implements the Convolution with a 2-D Image by applying the Filter to each 1-D subgrid.
- applyToGrid(Grid3D) - Method in class edu.stanford.rsl.tutorial.motionEstimation.SobelKernel1D
-
This method implements the Convolution with a 3-D Image by applying the Filter recursively to each 2-D subgrid.
- applyToGrid(Grid1D) - Method in class edu.stanford.rsl.tutorial.RamLakKernel
-
- applyToGrid1D(Grid3D) - Method in class edu.stanford.rsl.tutorial.atract.AtractFilter2D
-
This method implements the AtractFilter using the 1-D Implementation of the AtractKernel
- applyToGrid2D(Grid3D) - Method in class edu.stanford.rsl.tutorial.atract.AtractFilter2D
-
This method implements the AtractFilter using the 2-D Implementation of the AtractKernel
- applyToGrid2D(Grid2D) - Method in class edu.stanford.rsl.tutorial.atract.AtractFilter2D
-
This method implements the AtractFilter using the 2-D Implementation of the AtractKernel
- applyToGridLap1D(Grid2D) - Method in class edu.stanford.rsl.tutorial.atract.BorderRemoval1D
-
Use this method in combination with the Laplace1D Filter.
- applyToGridLap1D(Grid3D) - Method in class edu.stanford.rsl.tutorial.atract.BorderRemoval1D
-
Use this method in combination with the Laplace1D Filter
This method searches for the collimator borders in a laplacian filtered image.
- applyToGridLap2D(Grid2D) - Method in class edu.stanford.rsl.tutorial.atract.BorderRemoval1D
-
Use this method in combination with the Laplace2D Filter.
- applyToGridLap2D(Grid3D) - Method in class edu.stanford.rsl.tutorial.atract.BorderRemoval1D
-
Use this method in combination with the Laplace2D Filter
This method searches for the collimator borders in a laplacian filtered image.
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.AbsoluteValueTool
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.ApplyHounsfieldScaling
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.ApplyLambdaWeightingTool
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.AtractResidual2D
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.BilateralFilteringTool
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.CosineWeightingTool
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.DynamicDensityOptimizationScatterCorrectionTool
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.ExtremeValueTruncationFilter
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.FastRadialSymmetryTool
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.FiducialMarkerDetectionTool
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.Filtering2DTool
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.HilbertFilteringTool
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.HorizontalFlippingTool
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.HoughFilteringTool
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.ImageConstantMathFilter
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.ImageJParallelTool
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.ImageMathFilter
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.IndividualImageFilteringTool
-
Is called in every thread to apply the tool to an individual ImageProcessor
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.KinectBasedDetectorSaturationCorrectionTool
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.LaplaceFilteringTool
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.LogPoissonNoiseFilteringTool
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.MeanFilteringTool
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.MeanMarkerBasedProjectionShiftingTool
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.MeanMarkerBasedProjectionShiftingToolForXCAT
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.MedianFilteringTool
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.NonLinearGainCorrectionTool
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.NumericalDerivativeComputationTool
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.NumericalLinewiseAntiderivativeFilteringTool
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.PoissonNoiseFilteringTool
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.RampFilteringTool
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.redundancy.NooWeightingTool
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.redundancy.OSCARWeightingTool
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.redundancy.ParkerWeightingTool
-
Applies the tool to the given image processor.
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.redundancy.SilverWeightingTool
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.redundancy.WesargWeightingTool
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.Rotate90DegreeLeftTool
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.ThinPlateSplinesBasedProjectionWarpingTool
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.ThinPlateSplinesBasedProjectionWarpingToolForXCAT
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.TruncationCorrectionTool
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.filtering.VolumeAttenuationFactorCorrectionTool
-
- applyToolToImage(Grid2D) - Method in class edu.stanford.rsl.conrad.pipeline.IndividualImagePipelineFilteringTool
-
- applyToolToProcessorOld(ImageProcessor) - Method in class edu.stanford.rsl.conrad.filtering.PrimaryModulationScatterCorrectionTool
-
- applyTransform(Transform) - Method in class edu.stanford.rsl.conrad.data.Grid2D
-
- applyTransform(Transform) - Method in class edu.stanford.rsl.conrad.geometry.AbstractShape
-
- applyTransform(Transform) - Method in class edu.stanford.rsl.conrad.geometry.shapes.ArbitrarySurface
-
- applyTransform(Transform) - Method in class edu.stanford.rsl.conrad.geometry.shapes.compound.CompoundShape
-
- applyTransform(Transform) - Method in class edu.stanford.rsl.conrad.geometry.shapes.compound.LinearOctree
-
- applyTransform(Transform) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Cone
-
- applyTransform(Transform) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Cylinder
-
- applyTransform(Transform) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Edge
-
- applyTransform(Transform) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Ellipsoid
-
- applyTransform(Transform) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Plane3D
-
- applyTransform(Transform) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.PointND
-
- applyTransform(Transform) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.SimpleSurface
-
- applyTransform(Transform) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Sphere
-
- applyTransform(Transform) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.StraightLine
-
- applyTransform(Transform) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Triangle
-
- applyTransform(Transform) - Method in class edu.stanford.rsl.conrad.geometry.splines.BSpline
-
- applyTransform(Transform) - Method in class edu.stanford.rsl.conrad.geometry.splines.SurfaceBSpline
-
- applyTransform(Transform) - Method in class edu.stanford.rsl.conrad.geometry.splines.TimeVariantSurfaceBSpline
-
- applyTransform(Transform) - Method in interface edu.stanford.rsl.conrad.geometry.transforms.Transformable
-
Applies the Transform t to the object.
- applyTransform(AffineTransform) - Method in class edu.stanford.rsl.conrad.phantom.electrondensity.QuadricDisk
-
- applyTransform(Transform) - Method in class edu.stanford.rsl.conrad.physics.PhysicalObject
-
- aPYR - Static variable in class edu.stanford.rsl.conrad.physics.Constants
-
- ArbitraryRampFilter - Class in edu.stanford.rsl.conrad.filtering.rampfilters
-
- ArbitraryRampFilter() - Constructor for class edu.stanford.rsl.conrad.filtering.rampfilters.ArbitraryRampFilter
-
- ArbitrarySurface - Class in edu.stanford.rsl.conrad.geometry.shapes
-
Models an arbitrary shape centered at the origin using a base shape and bounding conditions
An affine transform class is used to translate and orient shapes from object space in world space
The affine transform of an arbitrary shape is always the same as that of its base shape;
- ArbitrarySurface(SimpleSurface, Collection<? extends AbstractBoundingCondition>) - Constructor for class edu.stanford.rsl.conrad.geometry.shapes.ArbitrarySurface
-
- areColinear(SimpleVector, SimpleVector, double) - Static method in class edu.stanford.rsl.conrad.geometry.General
-
- aReh - Static variable in class edu.stanford.rsl.conrad.physics.Constants
-
- aRel - Static variable in class edu.stanford.rsl.conrad.physics.Constants
-
- assertEqualElementWise(SimpleMatrix, SimpleMatrix, double) - Static method in class edu.stanford.rsl.conrad.utils.TestingTools
-
own assert for matrices
- assertEqualElementWise(SimpleVector, SimpleVector, double) - Static method in class edu.stanford.rsl.conrad.utils.TestingTools
-
own assert for vectors
- AtractExample - Class in edu.stanford.rsl.tutorial.atract
-
- AtractExample() - Constructor for class edu.stanford.rsl.tutorial.atract.AtractExample
-
- AtractFilter1D - Class in edu.stanford.rsl.tutorial.atract
-
This class combines the LaplacianKernel1D, the BorderRemoval1D and the residual AtractKernel1D
in order to enable reconstruction on truncated data
- AtractFilter1D() - Constructor for class edu.stanford.rsl.tutorial.atract.AtractFilter1D
-
- AtractFilter2D - Class in edu.stanford.rsl.tutorial.atract
-
This class combines the LaplacianKernel2D, the BorderRemoval2D and the residual AtractKernel
in order to enable reconstruction on truncated data
- AtractFilter2D() - Constructor for class edu.stanford.rsl.tutorial.atract.AtractFilter2D
-
- AtractKernel1D - Class in edu.stanford.rsl.tutorial.atract
-
This class implements the 1-D version of the ATRACT kernel.
- AtractKernel1D(int) - Constructor for class edu.stanford.rsl.tutorial.atract.AtractKernel1D
-
- AtractKernel1D_test - Class in edu.stanford.rsl.tutorial.atract
-
This class implements the 1-D version of the ATRACT kernel.
- AtractKernel1D_test(int) - Constructor for class edu.stanford.rsl.tutorial.atract.AtractKernel1D_test
-
- AtractKernel2D - Class in edu.stanford.rsl.tutorial.atract
-
This class implements the 2D kernel of the atract filter.
- AtractKernel2D(int, int) - Constructor for class edu.stanford.rsl.tutorial.atract.AtractKernel2D
-
- AtractKernel2D(int, int, float) - Constructor for class edu.stanford.rsl.tutorial.atract.AtractKernel2D
-
- AtractResidual2D - Class in edu.stanford.rsl.conrad.filtering
-
Filters all projections of a stack with the 2D residual kernel of the ATRACT reconstruction
- AtractResidual2D() - Constructor for class edu.stanford.rsl.conrad.filtering.AtractResidual2D
-
- AtractWithBinaryWeight - Class in edu.stanford.rsl.tutorial.atract
-
- AtractWithBinaryWeight() - Constructor for class edu.stanford.rsl.tutorial.atract.AtractWithBinaryWeight
-
- AttenuationRetrievalMode - Enum in edu.stanford.rsl.conrad.physics.materials.utils
-
Gives developer option on how to retrieve mass attenuation
- AttenuationType - Enum in edu.stanford.rsl.conrad.physics.materials.utils
-
Different types of attenuation.
- Au_mdensity - Static variable in class edu.stanford.rsl.conrad.physics.Constants
-
Gold mass density 1.932E+01 (g/cm3)
- augmentToHomgeneous(SimpleVector) - Static method in class edu.stanford.rsl.conrad.geometry.General
-
- AutomaticMarkerDetectionWorker - Class in edu.stanford.rsl.apps.gui.blobdetection
-
- AutomaticMarkerDetectionWorker() - Constructor for class edu.stanford.rsl.apps.gui.blobdetection.AutomaticMarkerDetectionWorker
-
- autoThreshold() - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor
-
Not implemented.
- Av - Static variable in class edu.stanford.rsl.conrad.physics.Constants
-
Avogadro's number (/mol)
- aWh - Static variable in class edu.stanford.rsl.conrad.physics.Constants
-
- aWl - Static variable in class edu.stanford.rsl.conrad.physics.Constants
-
- Axes() - Method in class edu.stanford.rsl.conrad.geometry.CoordinateSystem
-
- Axis - Class in edu.stanford.rsl.conrad.geometry
-
Class to model a coordinate axis;
- Axis(double...) - Constructor for class edu.stanford.rsl.conrad.geometry.Axis
-
- Axis(SimpleVector) - Constructor for class edu.stanford.rsl.conrad.geometry.Axis
-