Hierarchy For All Packages

Package Hierarchies:

• edu.stanford.rsl.apps,
• edu.stanford.rsl.apps.gui,
• edu.stanford.rsl.apps.gui.blobdetection,
• edu.stanford.rsl.apps.gui.pointselector,
• edu.stanford.rsl.apps.gui.roi,
• edu.stanford.rsl.conrad,
• edu.stanford.rsl.conrad.calibration,
• edu.stanford.rsl.conrad.cuda,
• edu.stanford.rsl.conrad.cuda.splines,
• edu.stanford.rsl.conrad.data,
• edu.stanford.rsl.conrad.data.iterators,
• edu.stanford.rsl.conrad.data.test,
• edu.stanford.rsl.conrad.filtering,
• edu.stanford.rsl.conrad.filtering.multiprojection,
• edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic,
• edu.stanford.rsl.conrad.filtering.multiprojection.blocks,
• edu.stanford.rsl.conrad.filtering.rampfilters,
• edu.stanford.rsl.conrad.filtering.redundancy,
• edu.stanford.rsl.conrad.fitting,
• edu.stanford.rsl.conrad.fitting.test,
• edu.stanford.rsl.conrad.geometry,
• edu.stanford.rsl.conrad.geometry.bounds,
• edu.stanford.rsl.conrad.geometry.motion,
• edu.stanford.rsl.conrad.geometry.motion.timewarp,
• edu.stanford.rsl.conrad.geometry.shapes,
• edu.stanford.rsl.conrad.geometry.shapes.compound,
• edu.stanford.rsl.conrad.geometry.shapes.simple,
• edu.stanford.rsl.conrad.geometry.splines,
• edu.stanford.rsl.conrad.geometry.test,
• edu.stanford.rsl.conrad.geometry.trajectories,
• edu.stanford.rsl.conrad.geometry.transforms,
• edu.stanford.rsl.conrad.geometry.transforms.test,
• edu.stanford.rsl.conrad.io,
• edu.stanford.rsl.conrad.metric,
• edu.stanford.rsl.conrad.numerics,
• edu.stanford.rsl.conrad.numerics.mathexpressions,
• edu.stanford.rsl.conrad.numerics.test,
• edu.stanford.rsl.conrad.opencl,
• edu.stanford.rsl.conrad.opencl.GLCLDemo,
• edu.stanford.rsl.conrad.opencl.rendering,
• edu.stanford.rsl.conrad.parallel,
• edu.stanford.rsl.conrad.phantom,
• edu.stanford.rsl.conrad.phantom.electrondensity,
• edu.stanford.rsl.conrad.phantom.forbild,
• edu.stanford.rsl.conrad.phantom.forbild.shapes,
• edu.stanford.rsl.conrad.phantom.renderer,
• edu.stanford.rsl.conrad.phantom.workers,
• edu.stanford.rsl.conrad.phantom.xcat,
• edu.stanford.rsl.conrad.physics,
• edu.stanford.rsl.conrad.physics.absorption,
• edu.stanford.rsl.conrad.physics.materials,
• edu.stanford.rsl.conrad.physics.materials.database,
• edu.stanford.rsl.conrad.physics.materials.database.xmldatagenerators,
• edu.stanford.rsl.conrad.physics.materials.materialsTest,
• edu.stanford.rsl.conrad.physics.materials.utils,
• edu.stanford.rsl.conrad.pipeline,
• edu.stanford.rsl.conrad.reconstruction,
• edu.stanford.rsl.conrad.reconstruction.iterative,
• edu.stanford.rsl.conrad.reconstruction.test,
• edu.stanford.rsl.conrad.reconstruction.voi,
• edu.stanford.rsl.conrad.rendering,
• edu.stanford.rsl.conrad.utils,
• edu.stanford.rsl.conrad.utils.interpolation,
• edu.stanford.rsl.conrad.utils.parsers,
• edu.stanford.rsl.conrad.volume3d,
• edu.stanford.rsl.conrad.volume3d.operations,
• edu.stanford.rsl.tutorial,
• edu.stanford.rsl.tutorial.atract,
• edu.stanford.rsl.tutorial.cone,
• edu.stanford.rsl.tutorial.fan,
• edu.stanford.rsl.tutorial.fan.dynamicCollimation,
• edu.stanford.rsl.tutorial.fan.redundancy,
• edu.stanford.rsl.tutorial.motionEstimation,
• edu.stanford.rsl.tutorial.parallel,
• edu.stanford.rsl.tutorial.phantoms,
• edu.stanford.rsl.tutorial.truncation

Class Hierarchy

• java.lang.Object
  • edu.stanford.rsl.conrad.physics.absorption.AbsorptionModel (implements edu.stanford.rsl.apps.gui.GUIConfigurable)
    • edu.stanford.rsl.conrad.physics.absorption.MonochromaticAbsorptionModel
    • edu.stanford.rsl.conrad.physics.absorption.PolychromaticAbsorptionModel
  • edu.stanford.rsl.conrad.geometry.bounds.AbstractBoundingCondition (implements java.io.Serializable)
    • edu.stanford.rsl.conrad.geometry.bounds.BoundingBox
    • edu.stanford.rsl.conrad.geometry.bounds.HalfSpaceBoundingCondition
    • edu.stanford.rsl.conrad.geometry.bounds.QuadricBoundingCondition
  • java.util.AbstractMap<K,V> (implements java.util.Map<K,V>)
    • java.util.TreeMap<K,V> (implements java.lang.Cloneable, java.util.NavigableMap<K,V>, java.io.Serializable)
      • edu.stanford.rsl.conrad.utils.interpolation.NumberInterpolatingTreeMap
  • edu.stanford.rsl.conrad.numerics.mathexpressions.AbstractMathExpression
    • edu.stanford.rsl.conrad.numerics.mathexpressions.CompoundExpression
    • edu.stanford.rsl.conrad.numerics.mathexpressions.FloatExpression
    • edu.stanford.rsl.conrad.numerics.mathexpressions.FunctionExpression
    • edu.stanford.rsl.conrad.numerics.mathexpressions.IdentifierExpression
    • edu.stanford.rsl.conrad.numerics.mathexpressions.MathExpression
    • edu.stanford.rsl.conrad.numerics.mathexpressions.RealExpression
  • edu.stanford.rsl.conrad.rendering.AbstractRayTracer
    • edu.stanford.rsl.conrad.rendering.PriorityRayTracer
    • edu.stanford.rsl.conrad.rendering.SimpleRayTracer
      • edu.stanford.rsl.conrad.rendering.Simple1DRayTracer
        • edu.stanford.rsl.conrad.rendering.Priority1DRayTracer
  • edu.stanford.rsl.conrad.rendering.AbstractScene (implements java.util.Collection<E>, java.io.Serializable)
    • edu.stanford.rsl.conrad.rendering.PrioritizableScene
      • edu.stanford.rsl.conrad.phantom.AnalyticPhantom (implements edu.stanford.rsl.apps.gui.Citeable, edu.stanford.rsl.apps.gui.GUIConfigurable)
        • edu.stanford.rsl.conrad.phantom.AnalyticPhantom4D (implements edu.stanford.rsl.conrad.geometry.motion.MotionField)
          • edu.stanford.rsl.conrad.phantom.MovingBallPhantom
          • edu.stanford.rsl.conrad.phantom.xcat.XCatScene
            • edu.stanford.rsl.conrad.phantom.xcat.CoronaryScene
            • edu.stanford.rsl.conrad.phantom.xcat.HeartScene
            • edu.stanford.rsl.conrad.phantom.xcat.WholeBodyScene
              • edu.stanford.rsl.conrad.phantom.xcat.BreathingScene
              • edu.stanford.rsl.conrad.phantom.xcat.CombinedBreathingHeartScene
              • edu.stanford.rsl.conrad.phantom.xcat.DynamicSquatScene
              • edu.stanford.rsl.conrad.phantom.xcat.SquatScene
        • edu.stanford.rsl.conrad.phantom.BeadRemovalPhantom
        • edu.stanford.rsl.conrad.phantom.BoxPhantom
        • edu.stanford.rsl.conrad.phantom.CatheterPhantom
        • edu.stanford.rsl.conrad.phantom.CatphanCTP528
        • edu.stanford.rsl.conrad.phantom.electrondensity.CrisEDPhantomM062
        • edu.stanford.rsl.conrad.phantom.DefrisePhantom
        • edu.stanford.rsl.conrad.phantom.forbild.ForbildPhantom
        • edu.stanford.rsl.conrad.phantom.MTFBeadPhantom
        • edu.stanford.rsl.conrad.phantom.SevenBeadPhantom
        • edu.stanford.rsl.conrad.phantom.SheppLoganPhantom
        • edu.stanford.rsl.conrad.phantom.SpherePhantom
        • edu.stanford.rsl.conrad.phantom.WaterCylinderPhantom
      • edu.stanford.rsl.conrad.phantom.electrondensity.EDInnerDisk
      • edu.stanford.rsl.conrad.phantom.electrondensity.EDOuterDisk
      • edu.stanford.rsl.conrad.phantom.electrondensity.Insert
    • edu.stanford.rsl.conrad.rendering.SimpleScene
  • edu.stanford.rsl.conrad.geometry.AbstractShape (implements java.io.Serializable, edu.stanford.rsl.conrad.geometry.transforms.Transformable)
    • edu.stanford.rsl.conrad.geometry.AbstractCurve
      • edu.stanford.rsl.conrad.geometry.splines.BSpline
        • edu.stanford.rsl.conrad.cuda.splines.CUDABSpline
        • edu.stanford.rsl.conrad.opencl.OpenCLUniformBSpline (implements edu.stanford.rsl.conrad.opencl.OpenCLEvaluatable)
          • edu.stanford.rsl.conrad.opencl.OpenCLUniformTextureBSpline
        • edu.stanford.rsl.conrad.geometry.splines.UniformCubicBSpline
      • edu.stanford.rsl.conrad.geometry.shapes.simple.StraightLine
        • edu.stanford.rsl.conrad.geometry.shapes.simple.Edge
    • edu.stanford.rsl.conrad.geometry.AbstractSurface
      • edu.stanford.rsl.conrad.geometry.shapes.simple.Plane3D
        • edu.stanford.rsl.conrad.geometry.shapes.simple.Triangle
      • edu.stanford.rsl.conrad.geometry.shapes.simple.SimpleSurface
        • edu.stanford.rsl.conrad.geometry.shapes.ArbitrarySurface
        • edu.stanford.rsl.conrad.geometry.shapes.simple.Box
          • edu.stanford.rsl.conrad.phantom.forbild.shapes.ForbildBox
        • edu.stanford.rsl.conrad.geometry.shapes.simple.QuadricSurface
          • edu.stanford.rsl.conrad.geometry.shapes.simple.Cone
            • edu.stanford.rsl.conrad.phantom.forbild.shapes.ForbildCone
          • edu.stanford.rsl.conrad.geometry.shapes.simple.Cylinder
            • edu.stanford.rsl.conrad.phantom.forbild.shapes.ForbildCylinder
            • edu.stanford.rsl.conrad.opencl.OpenCLCylinder (implements edu.stanford.rsl.conrad.opencl.OpenCLEvaluatable)
          • edu.stanford.rsl.conrad.geometry.shapes.simple.Ellipsoid
            • edu.stanford.rsl.conrad.phantom.forbild.shapes.ForbildEllipsoid
          • edu.stanford.rsl.conrad.geometry.shapes.simple.Sphere
            • edu.stanford.rsl.conrad.phantom.forbild.shapes.ForbildSphere
            • edu.stanford.rsl.conrad.opencl.OpenCLSphere (implements edu.stanford.rsl.conrad.opencl.OpenCLEvaluatable)
      • edu.stanford.rsl.conrad.geometry.splines.SurfaceBSpline
        • edu.stanford.rsl.conrad.opencl.OpenCLUniformSurfaceBSpline (implements edu.stanford.rsl.conrad.opencl.OpenCLEvaluatable)
          • edu.stanford.rsl.conrad.opencl.OpenCLUniformTextureSurfaceBSpline
        • edu.stanford.rsl.conrad.geometry.splines.SurfaceUniformCubicBSpline
      • edu.stanford.rsl.conrad.geometry.splines.TimeVariantSurfaceBSpline
        • edu.stanford.rsl.conrad.geometry.splines.MotionDefectTimeVariantSurfaceBSpline
        • edu.stanford.rsl.conrad.geometry.splines.NearestNeighborTimeVariantSurfaceBSpline
        • edu.stanford.rsl.conrad.opencl.OpenCLTimeVariantSurfaceBSpline (implements edu.stanford.rsl.conrad.opencl.OpenCLEvaluatable)
          • edu.stanford.rsl.conrad.opencl.OpenCLTextureTimeVariantSurfaceBSpline
    • edu.stanford.rsl.conrad.geometry.shapes.compound.CompoundShape (implements java.util.Collection<E>)
      • edu.stanford.rsl.conrad.geometry.shapes.compound.LinearOctree
        • edu.stanford.rsl.conrad.geometry.shapes.compound.NestedOctree
  • edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.AnisotropicFilterFunction
  • edu.stanford.rsl.tutorial.atract.AtractExample
  • edu.stanford.rsl.tutorial.atract.AtractFilter1D
  • edu.stanford.rsl.tutorial.atract.AtractFilter2D
  • edu.stanford.rsl.tutorial.atract.AtractWithBinaryWeight
  • edu.stanford.rsl.conrad.geometry.Axis
  • edu.stanford.rsl.conrad.utils.BilinearInterpolatingDoubleArray (implements java.io.Serializable)
  • edu.stanford.rsl.tutorial.atract.BorderRemoval1D
  • edu.stanford.rsl.tutorial.atract.BorderRemoval2D
  • edu.stanford.rsl.conrad.pipeline.BufferedProjectionSink (implements edu.stanford.rsl.apps.gui.Citeable, edu.stanford.rsl.apps.gui.GUIConfigurable, edu.stanford.rsl.conrad.pipeline.ProjectionSink, edu.stanford.rsl.conrad.io.SafeSerializable)
    • edu.stanford.rsl.conrad.pipeline.DevNullSink
    • edu.stanford.rsl.conrad.io.ImagePlusDataSink
    • edu.stanford.rsl.conrad.io.IndividualFilesProjectionDataSink
  • edu.stanford.rsl.conrad.calibration.CalibrationBead (implements java.lang.Comparable<T>)
  • edu.stanford.rsl.conrad.data.Complex
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Container
      • javax.swing.JComponent (implements java.io.Serializable)
        • javax.swing.JPanel (implements javax.accessibility.Accessible)
          • edu.stanford.rsl.conrad.phantom.electrondensity.CrisEDPhantomGUI (implements java.awt.event.ActionListener, java.awt.event.ItemListener)
          • edu.stanford.rsl.apps.gui.ExperimentPanel (implements java.awt.event.ActionListener)
          • edu.stanford.rsl.apps.gui.GUICompatibleObjectVisualizationPanel (implements java.awt.event.ActionListener, edu.stanford.rsl.apps.gui.UpdateableGUI)
          • edu.stanford.rsl.apps.gui.RegistryEditor (implements java.awt.event.ActionListener)
      • java.awt.Window (implements javax.accessibility.Accessible)
        • java.awt.Frame (implements java.awt.MenuContainer)
          • javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • edu.stanford.rsl.apps.gui.ConfigurationFrame (implements java.awt.event.ActionListener)
            • edu.stanford.rsl.apps.gui.ConfigurePipelineFrame (implements java.awt.event.ActionListener, java.awt.event.MouseListener, edu.stanford.rsl.apps.gui.UpdateableGUI)
            • edu.stanford.rsl.apps.gui.Experimenter (implements java.awt.event.ActionListener, java.awt.event.MouseListener)
            • edu.stanford.rsl.conrad.cuda.JCudaDriverTextureSample (implements javax.media.opengl.GLEventListener, edu.stanford.rsl.conrad.cuda.MouseControlable)
              • edu.stanford.rsl.conrad.cuda.ImagePlusVolumeRenderer
            • edu.stanford.rsl.apps.gui.blobdetection.MarkerDetection (implements java.awt.event.ActionListener, javax.swing.event.ChangeListener, javax.swing.event.DocumentListener)
            • edu.stanford.rsl.conrad.opencl.rendering.OpenCLTextureRendering (implements javax.media.opengl.GLEventListener, edu.stanford.rsl.conrad.opencl.rendering.MouseControlable)
              • edu.stanford.rsl.conrad.opencl.rendering.OpenCLVolumeRenderer
            • edu.stanford.rsl.apps.gui.PhantomMaker
            • edu.stanford.rsl.apps.gui.pointselector.PointSelector (implements java.awt.event.ActionListener, javax.swing.event.ListSelectionListener)
            • edu.stanford.rsl.apps.gui.RawDataOpener (implements java.awt.event.ActionListener)
            • edu.stanford.rsl.apps.gui.ReconstructionPipelineFrame (implements java.awt.event.ActionListener, edu.stanford.rsl.apps.gui.UpdateableGUI)
            • edu.stanford.rsl.apps.gui.TrajectoryEditor
  • edu.stanford.rsl.conrad.physics.materials.database.CompositionToAbsorptionEdgeMap
  • edu.stanford.rsl.tutorial.cone.ConeBeamBackprojector
  • edu.stanford.rsl.tutorial.cone.ConeBeamCosineFilter
  • edu.stanford.rsl.tutorial.cone.ConeBeamProjector
  • edu.stanford.rsl.tutorial.cone.ConeBeamReconstructionExample
  • edu.stanford.rsl.conrad.io.ConfigFile (implements edu.stanford.rsl.conrad.io.ConfigFileParser, java.io.Serializable)
    • edu.stanford.rsl.conrad.io.BetaConfigFile
    • edu.stanford.rsl.conrad.io.LUTConfigFile
  • edu.stanford.rsl.conrad.utils.Configuration (implements edu.stanford.rsl.conrad.io.SafeSerializable)
  • edu.stanford.rsl.apps.gui.blobdetection.ConnectedComponent3D
  • edu.stanford.rsl.apps.Conrad
  • edu.stanford.rsl.conrad.utils.CONRAD
  • edu.stanford.rsl.conrad.physics.Constants
  • edu.stanford.rsl.conrad.geometry.ConvexHull
  • edu.stanford.rsl.conrad.geometry.CoordinateSystem
    • edu.stanford.rsl.conrad.geometry.shapes.StandardCoordinateSystem
  • edu.stanford.rsl.tutorial.fan.CosineFilter
  • edu.stanford.rsl.conrad.cuda.CUDAForwardProjector (implements edu.stanford.rsl.apps.gui.Citeable, edu.stanford.rsl.apps.gui.GUIConfigurable)
  • edu.stanford.rsl.conrad.cuda.CUDAForwardProjectorWithMotion (implements edu.stanford.rsl.apps.gui.Citeable, edu.stanford.rsl.apps.gui.GUIConfigurable)
  • edu.stanford.rsl.conrad.cuda.CUDAUtil
  • edu.stanford.rsl.conrad.cuda.CUDAVolumeTest
  • edu.stanford.rsl.conrad.geometry.test.CurveTests
  • edu.stanford.rsl.tutorial.motionEstimation.CylinderVolumeMask
  • edu.stanford.rsl.conrad.numerics.DecompositionQR
  • edu.stanford.rsl.conrad.numerics.DecompositionRQ
  • edu.stanford.rsl.conrad.numerics.DecompositionSVD (implements java.io.Serializable)
  • edu.stanford.rsl.tutorial.DerivativeKernel (implements edu.stanford.rsl.tutorial.GridKernel)
  • edu.stanford.rsl.conrad.utils.DicomConfigurationUpdater (implements edu.stanford.rsl.conrad.utils.ConfigurationUpdater)
  • edu.stanford.rsl.conrad.utils.DicomDecoder
  • edu.stanford.rsl.tutorial.atract.DisplayAtract
  • edu.stanford.rsl.tutorial.DisplayReconstruction
  • edu.stanford.rsl.tutorial.DisplaySinogram
  • edu.stanford.rsl.tutorial.DisplayUniformCircle
  • edu.stanford.rsl.conrad.reconstruction.iterative.DistanceDrivenBasedReconstruction.LeastSquareReconstructionCG
  • edu.stanford.rsl.conrad.utils.DoubleArrayUtil
  • edu.stanford.rsl.conrad.utils.DoublePrecisionPointUtil
  • edu.stanford.rsl.conrad.physics.materials.database.ElementalMassAttenuationData
  • edu.stanford.rsl.conrad.physics.EnergyDependentCoefficients
  • edu.stanford.rsl.tutorial.motionEstimation.EstimateBSplineSurface
  • edu.stanford.rsl.tutorial.motionEstimation.EstimateCubic2DSpline
  • edu.stanford.rsl.apps.gui.roi.EvaluateROI (implements edu.stanford.rsl.apps.gui.GUIConfigurable)
    • edu.stanford.rsl.apps.gui.roi.CompareGrayValues
    • edu.stanford.rsl.apps.gui.roi.CopyROI
    • edu.stanford.rsl.apps.gui.roi.DefineHounsfieldScaling
    • edu.stanford.rsl.apps.gui.roi.LearnHounsfieldScaling
    • edu.stanford.rsl.apps.gui.roi.LinewiseFill
    • edu.stanford.rsl.apps.gui.roi.Measure3DBeadMTF
      • edu.stanford.rsl.apps.gui.roi.Measure2DBeadMTFAngularRange
      • edu.stanford.rsl.apps.gui.roi.Measure2DBeadMTFMultiDirection
    • edu.stanford.rsl.apps.gui.roi.MeasureEdgeMTF
    • edu.stanford.rsl.apps.gui.roi.MeasureInlayMTF
    • edu.stanford.rsl.apps.gui.roi.MeasureMTFDroege
    • edu.stanford.rsl.apps.gui.roi.MeasureNoise
    • edu.stanford.rsl.apps.gui.roi.MeasurePatternMTF
    • edu.stanford.rsl.apps.gui.roi.MeasurePDS2BeadAccuracy
    • edu.stanford.rsl.apps.gui.roi.MeasureSlantMTF
    • edu.stanford.rsl.apps.gui.roi.VariableFramerateVisualizer
    • edu.stanford.rsl.apps.gui.roi.ZeroFill
  • edu.stanford.rsl.conrad.numerics.mathexpressions.Evaluator
  • edu.stanford.rsl.conrad.numerics.mathexpressions.ExpressionParser
  • edu.stanford.rsl.tutorial.fan.FanBeamBackprojector2D
  • edu.stanford.rsl.tutorial.fan.FanBeamComparisonToCONRAD
  • edu.stanford.rsl.tutorial.FanBeamParallelBeamComparison
  • edu.stanford.rsl.tutorial.fan.FanBeamProjector2D
  • edu.stanford.rsl.tutorial.fan.FanBeamReconstructionExample
  • edu.stanford.rsl.tutorial.fan.redundancy.FanBeamWeightingComparison
  • edu.stanford.rsl.conrad.data.test.FFTTests
  • edu.stanford.rsl.conrad.utils.FFTUtil
  • edu.stanford.rsl.conrad.volume3d.FFTVolumeHandle
    • edu.stanford.rsl.conrad.cuda.CUDAFFTVolumeHandle
    • edu.stanford.rsl.conrad.volume3d.JTransformsFFTVolumeHandle
  • edu.stanford.rsl.conrad.utils.FHTUtil
  • javax.swing.filechooser.FileFilter
    • edu.stanford.rsl.conrad.utils.StringFileFilter
  • ij.io.FileInfo (implements java.lang.Cloneable)
    • edu.stanford.rsl.conrad.io.NrrdFileInfo
  • edu.stanford.rsl.conrad.utils.FileJoiner
  • ij.io.FileOpener
    • edu.stanford.rsl.conrad.io.FlexibleFileOpener
  • edu.stanford.rsl.conrad.io.FileProjectionSource (implements edu.stanford.rsl.conrad.pipeline.ProjectionSource)
    • edu.stanford.rsl.conrad.io.DennerleinProjectionSource
    • edu.stanford.rsl.conrad.io.DicomProjectionSource
    • edu.stanford.rsl.conrad.io.ImagePlusProjectionDataSource
    • edu.stanford.rsl.conrad.io.NRRDProjectionSource
    • edu.stanford.rsl.conrad.io.SEQProjectionSource
    • edu.stanford.rsl.conrad.io.TiffProjectionSource
    • edu.stanford.rsl.conrad.io.ZipProjectionSource
  • edu.stanford.rsl.conrad.utils.FileUtil
  • edu.stanford.rsl.conrad.utils.FloatArrayUtil
  • edu.stanford.rsl.conrad.data.iterators.FloatIterator
  • edu.stanford.rsl.conrad.phantom.forbild.ForbildParser (implements edu.stanford.rsl.conrad.utils.parsers.SceneFileParser)
  • edu.stanford.rsl.conrad.phantom.forbild.ForbildShapeFactory
  • edu.stanford.rsl.conrad.physics.materials.database.FormulaToNameMap
  • edu.stanford.rsl.conrad.fitting.Function (implements java.io.Serializable)
    • edu.stanford.rsl.conrad.fitting.GaussianFunction
    • edu.stanford.rsl.conrad.fitting.IdentityFunction
    • edu.stanford.rsl.conrad.fitting.LinearFunction
    • edu.stanford.rsl.conrad.fitting.LogarithmicFunction
    • edu.stanford.rsl.conrad.fitting.PolynomialFunction
    • edu.stanford.rsl.conrad.fitting.RANSACFittedFunction
      • edu.stanford.rsl.conrad.fitting.ConstrainedRANSACFittedFunction
  • edu.stanford.rsl.conrad.fitting.test.FunctionTest
  • edu.stanford.rsl.conrad.geometry.General
  • edu.stanford.rsl.conrad.geometry.test.GeometryTests
  • edu.stanford.rsl.conrad.geometry.shapes.simple.GeometryTests
  • edu.stanford.rsl.conrad.opencl.GLCLDemo.GLCLInteroperabilityDemo (implements javax.media.opengl.GLEventListener)
  • edu.stanford.rsl.conrad.data.Grid
    • edu.stanford.rsl.conrad.data.Grid1D
      • edu.stanford.rsl.conrad.data.Grid1DComplex
        • edu.stanford.rsl.tutorial.atract.AtractKernel1D
        • edu.stanford.rsl.tutorial.atract.AtractKernel1D_test
        • edu.stanford.rsl.tutorial.atract.LaplaceKernel1D (implements edu.stanford.rsl.tutorial.GridKernel)
        • edu.stanford.rsl.tutorial.RamLakKernel (implements edu.stanford.rsl.tutorial.GridKernel)
        • edu.stanford.rsl.tutorial.motionEstimation.SmoothKernel1D (implements edu.stanford.rsl.tutorial.GridKernel)
        • edu.stanford.rsl.tutorial.motionEstimation.SobelKernel1D (implements edu.stanford.rsl.tutorial.GridKernel)
    • edu.stanford.rsl.conrad.data.Grid2D (implements edu.stanford.rsl.conrad.geometry.transforms.Transformable)
      • edu.stanford.rsl.tutorial.fan.redundancy.BinaryWeights
      • edu.stanford.rsl.tutorial.fan.redundancy.BinaryWeights_erodeByOne
      • edu.stanford.rsl.tutorial.fan.redundancy.BinaryWeights_Normal
      • edu.stanford.rsl.tutorial.fan.redundancy.CompensationWeights
      • edu.stanford.rsl.tutorial.fan.dynamicCollimation.copyRedundantData
      • edu.stanford.rsl.conrad.data.Grid2DComplex
        • edu.stanford.rsl.tutorial.atract.AtractKernel2D
      • edu.stanford.rsl.tutorial.fan.redundancy.ParkerWeights
      • edu.stanford.rsl.tutorial.phantoms.Phantom
        • edu.stanford.rsl.tutorial.truncation.ConstantValueZeroArtifactImage (implements edu.stanford.rsl.apps.gui.Citeable)
        • edu.stanford.rsl.tutorial.phantoms.DotsGrid2D
        • edu.stanford.rsl.tutorial.phantoms.FilePhantom
        • edu.stanford.rsl.tutorial.phantoms.MickeyMouseGrid2D
        • edu.stanford.rsl.tutorial.phantoms.MTFphantom
        • edu.stanford.rsl.tutorial.truncation.NonZeroArtifactImage (implements edu.stanford.rsl.apps.gui.Citeable)
        • edu.stanford.rsl.tutorial.phantoms.SheppLogan
        • edu.stanford.rsl.tutorial.phantoms.TestObject1
        • edu.stanford.rsl.tutorial.phantoms.TestObject2
        • edu.stanford.rsl.tutorial.phantoms.UniformCircleGrid2D
      • edu.stanford.rsl.tutorial.fan.redundancy.SilverWeights
    • edu.stanford.rsl.conrad.data.Grid3D
      • edu.stanford.rsl.tutorial.phantoms.Phantom3D
        • edu.stanford.rsl.tutorial.phantoms.SimpleCubes3D
        • edu.stanford.rsl.tutorial.phantoms.Sphere3D
  • edu.stanford.rsl.conrad.utils.GUIUtil
  • edu.stanford.rsl.conrad.physics.HalfValueLayerFunction (implements edu.stanford.rsl.jpop.SimpleOptimizableFunction)
  • edu.stanford.rsl.tutorial.HilbertKernel (implements edu.stanford.rsl.tutorial.GridKernel)
  • edu.stanford.rsl.conrad.reconstruction.iterative.huberPenalty
  • edu.stanford.rsl.conrad.filtering.ImageFilteringTool (implements edu.stanford.rsl.apps.gui.Citeable, java.lang.Cloneable, edu.stanford.rsl.apps.gui.GUIConfigurable, edu.stanford.rsl.conrad.io.SafeSerializable)
    • edu.stanford.rsl.conrad.filtering.IndividualImageFilteringTool (implements edu.stanford.rsl.conrad.parallel.NamedParallelizableRunnable)
      • edu.stanford.rsl.conrad.filtering.AbsoluteValueTool
      • edu.stanford.rsl.conrad.filtering.ApplyHounsfieldScaling
      • edu.stanford.rsl.conrad.filtering.ApplyLambdaWeightingTool
      • edu.stanford.rsl.conrad.filtering.AtractResidual2D
      • edu.stanford.rsl.conrad.filtering.BilateralFilteringTool
      • edu.stanford.rsl.conrad.filtering.CosineWeightingTool
      • edu.stanford.rsl.conrad.filtering.DynamicDensityOptimizationScatterCorrectionTool
      • edu.stanford.rsl.conrad.filtering.FastRadialSymmetryTool
      • edu.stanford.rsl.conrad.filtering.FiducialMarkerDetectionTool
      • edu.stanford.rsl.conrad.filtering.Filtering2DTool
      • edu.stanford.rsl.conrad.filtering.HilbertFilteringTool
      • edu.stanford.rsl.conrad.filtering.HorizontalFlippingTool
      • edu.stanford.rsl.conrad.filtering.HoughFilteringTool
      • edu.stanford.rsl.conrad.filtering.ImageConstantMathFilter
      • edu.stanford.rsl.conrad.filtering.ImageJParallelTool
      • edu.stanford.rsl.conrad.filtering.ImageMathFilter
      • edu.stanford.rsl.conrad.pipeline.IndividualImagePipelineFilteringTool
        • edu.stanford.rsl.conrad.filtering.ExtremeValueTruncationFilter
      • edu.stanford.rsl.conrad.filtering.KinectBasedDetectorSaturationCorrectionTool
      • edu.stanford.rsl.conrad.filtering.LaplaceFilteringTool
      • edu.stanford.rsl.conrad.filtering.MeanFilteringTool
      • edu.stanford.rsl.conrad.filtering.MeanMarkerBasedProjectionShiftingTool
      • edu.stanford.rsl.conrad.filtering.MeanMarkerBasedProjectionShiftingToolForXCAT
      • edu.stanford.rsl.conrad.filtering.MedianFilteringTool
      • edu.stanford.rsl.conrad.filtering.NonLinearGainCorrectionTool
      • edu.stanford.rsl.conrad.filtering.NumericalDerivativeComputationTool
      • edu.stanford.rsl.conrad.filtering.NumericalLinewiseAntiderivativeFilteringTool
      • edu.stanford.rsl.conrad.filtering.redundancy.ParkerWeightingTool
        • edu.stanford.rsl.conrad.filtering.redundancy.NooWeightingTool
        • edu.stanford.rsl.conrad.filtering.redundancy.OSCARWeightingTool
        • edu.stanford.rsl.conrad.filtering.redundancy.SilverWeightingTool
        • edu.stanford.rsl.conrad.filtering.redundancy.TrajectoryParkerWeightingTool
        • edu.stanford.rsl.conrad.filtering.redundancy.WesargWeightingTool
      • edu.stanford.rsl.conrad.filtering.PoissonNoiseFilteringTool
        • edu.stanford.rsl.conrad.filtering.LogPoissonNoiseFilteringTool
      • edu.stanford.rsl.conrad.filtering.RampFilteringTool
      • edu.stanford.rsl.conrad.filtering.Rotate90DegreeLeftTool
      • edu.stanford.rsl.conrad.filtering.ThinPlateSplinesBasedProjectionWarpingTool
      • edu.stanford.rsl.conrad.filtering.ThinPlateSplinesBasedProjectionWarpingToolForXCAT
      • edu.stanford.rsl.conrad.filtering.TruncationCorrectionTool
      • edu.stanford.rsl.conrad.filtering.VolumeAttenuationFactorCorrectionTool
    • edu.stanford.rsl.conrad.filtering.multiprojection.MultiProjectionFilter (implements edu.stanford.rsl.conrad.pipeline.ProjectionSink, java.lang.Runnable)
      • edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.AnisotropicStructureTensorNoiseFilter
        • edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.CUDAAnisotropicStructureTensorNoiseFilter
        • edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.CUDAFFTAnisotropicStructureTensorNoiseFilter
      • edu.stanford.rsl.conrad.filtering.multiprojection.BlockWiseMultiProjectionFilter
        • edu.stanford.rsl.conrad.filtering.multiprojection.BilateralFilter3D
        • edu.stanford.rsl.conrad.filtering.multiprojection.BlockWiseStructureTensor
        • edu.stanford.rsl.conrad.filtering.multiprojection.IdentityTransformFilter
        • edu.stanford.rsl.conrad.filtering.multiprojection.IterativeReconstructionFilter
      • edu.stanford.rsl.conrad.filtering.multiprojection.DiaphragmTrackingTool
      • edu.stanford.rsl.conrad.filtering.multiprojection.Lambda3DDerivativeFilter
      • edu.stanford.rsl.conrad.filtering.PrimaryModulationScatterCorrectionTool
      • edu.stanford.rsl.conrad.filtering.multiprojection.ProjectionSortingFilter
      • edu.stanford.rsl.conrad.reconstruction.ReconstructionFilter
        • edu.stanford.rsl.conrad.reconstruction.FBPReconstructionFilter
          • edu.stanford.rsl.conrad.reconstruction.VOIBasedReconstructionFilter
            • edu.stanford.rsl.conrad.reconstruction.CPUSuperShortScanBackprojector
            • edu.stanford.rsl.conrad.cuda.CUDABackProjector (implements java.lang.Runnable)
            • edu.stanford.rsl.conrad.cuda.CUDACompensatedBackProjector (implements java.lang.Runnable)
            • edu.stanford.rsl.conrad.reconstruction.LolaBunnyBackprojector
            • edu.stanford.rsl.conrad.reconstruction.MotionCompensatedVOIBasedReconstructionFilter
            • edu.stanford.rsl.conrad.opencl.OpenCLBackProjector (implements edu.stanford.rsl.apps.gui.Citeable, java.lang.Runnable)
            • edu.stanford.rsl.tutorial.motionEstimation.OpenCLCompensatedBackProjector (implements edu.stanford.rsl.apps.gui.Citeable, java.lang.Runnable)
            • edu.stanford.rsl.tutorial.motionEstimation.OpenCLCompensatedBackProjector1DCompressionField (implements edu.stanford.rsl.apps.gui.Citeable, java.lang.Runnable)
            • edu.stanford.rsl.tutorial.motionEstimation.OpenCLCompensatedBackProjectorTPS (implements edu.stanford.rsl.apps.gui.Citeable, java.lang.Runnable)
            • edu.stanford.rsl.conrad.reconstruction.RayWeightCorrectingCPUSuperShortScanBackprojector
            • edu.stanford.rsl.conrad.reconstruction.RigidBody3DTransformationVOIBasedReconstructionFilter
            • edu.stanford.rsl.conrad.reconstruction.RigidBody3DTransformationVOIBasedReconstructionFilterForXCAT
            • edu.stanford.rsl.conrad.reconstruction.SubVolumeBackprojector
              • edu.stanford.rsl.conrad.reconstruction.MotionCompensatedSubVolumeBackprojector
            • edu.stanford.rsl.apps.TestJang
        • edu.stanford.rsl.conrad.reconstruction.IterativeReconstruction
          • edu.stanford.rsl.conrad.reconstruction.ModelBasedIterativeReconstruction
            • edu.stanford.rsl.conrad.reconstruction.DistanceDrivenBasedReconstruction
            • edu.stanford.rsl.conrad.reconstruction.SeparableFootprintsBasedReconstruction
          • edu.stanford.rsl.conrad.reconstruction.RayDrivenBasedReconstruction
        • edu.stanford.rsl.conrad.reconstruction.iterative.IterativeReconstruction
          • edu.stanford.rsl.conrad.reconstruction.iterative.ModelBasedIterativeReconstruction
            • edu.stanford.rsl.conrad.reconstruction.iterative.DistanceDrivenBasedReconstruction
              • edu.stanford.rsl.conrad.reconstruction.iterative.LeastSquaresCG
              • edu.stanford.rsl.conrad.reconstruction.iterative.PenalizedLeastSquareART
            • edu.stanford.rsl.conrad.reconstruction.iterative.SeparableFootprintsBasedReconstruction
          • edu.stanford.rsl.conrad.reconstruction.iterative.RayDrivenBasedReconstruction
        • edu.stanford.rsl.conrad.reconstruction.SimpleIterativeReconstruction
        • edu.stanford.rsl.conrad.reconstruction.SuperShortScanBackprojection
      • edu.stanford.rsl.conrad.filtering.multiprojection.Triangulation
  • edu.stanford.rsl.conrad.metric.ImageMetric (implements edu.stanford.rsl.apps.gui.Citeable, java.io.Serializable)
    • edu.stanford.rsl.conrad.metric.MeanSquareErrorMetric
      • edu.stanford.rsl.conrad.metric.RootMeanSquareErrorMetric
    • edu.stanford.rsl.conrad.metric.NormalizedImageMetric
      • edu.stanford.rsl.conrad.metric.NormalizedImprovement
  • ij.ImagePlus (implements java.lang.Cloneable, java.awt.image.ImageObserver, ij.measure.Measurements)
    • edu.stanford.rsl.conrad.io.Nrrd_Reader (implements ij.plugin.PlugIn)
  • edu.stanford.rsl.conrad.filtering.multiprojection.blocks.ImageProcessingBlock (implements java.lang.Cloneable, edu.stanford.rsl.apps.gui.GUIConfigurable, edu.stanford.rsl.conrad.parallel.ParallelizableRunnable, java.io.Serializable)
    • edu.stanford.rsl.conrad.filtering.multiprojection.blocks.AnisotropicStructureTensorBlock
    • edu.stanford.rsl.conrad.filtering.multiprojection.blocks.BilateralFilter3DBlock
    • edu.stanford.rsl.conrad.filtering.multiprojection.blocks.IdentityTransformBlock
    • edu.stanford.rsl.conrad.filtering.multiprojection.blocks.IterativeReconstructionBlock
  • ij.process.ImageProcessor (implements java.lang.Cloneable)
    • edu.stanford.rsl.conrad.io.SerializableFloatProcessor (implements java.io.Serializable)
  • edu.stanford.rsl.conrad.utils.ImageProcessorBuffer
  • edu.stanford.rsl.conrad.utils.ImageUtil
  • edu.stanford.rsl.tutorial.motionEstimation.InitialOptimization
  • edu.stanford.rsl.conrad.io.InteractiveConfigFileReader
  • edu.stanford.rsl.conrad.data.InterpolationOperators
  • edu.stanford.rsl.conrad.utils.interpolation.Interpolator (implements java.io.Serializable)
    • edu.stanford.rsl.conrad.utils.interpolation.LinearInterpolator
    • edu.stanford.rsl.conrad.utils.interpolation.LogLinearInterpolator
    • edu.stanford.rsl.conrad.utils.interpolation.LogLogInterpolator
  • edu.stanford.rsl.conrad.filtering.rampfilters.IRRFilter
  • edu.stanford.rsl.conrad.reconstruction.test.IterativeReconstructionTestA
  • edu.stanford.rsl.conrad.reconstruction.test.IterativeReconstructionTestB
  • edu.stanford.rsl.apps.JavaDocGenerator
  • edu.stanford.rsl.conrad.cuda.JCudaRuntimeSample
  • edu.stanford.rsl.tutorial.atract.Kollimator
  • edu.stanford.rsl.conrad.physics.LambdaFunction (implements edu.stanford.rsl.conrad.parallel.ParallelizableRunnable, edu.stanford.rsl.jpop.SimpleOptimizableFunction)
  • edu.stanford.rsl.tutorial.atract.LaplaceKernel2D
  • edu.stanford.rsl.conrad.utils.LinearInterpolatingDoubleArray
  • edu.stanford.rsl.conrad.physics.materials.utils.LocalMassAttenuationCalculator
  • edu.stanford.rsl.apps.gui.blobdetection.MarkerDetectionWorker
    • edu.stanford.rsl.apps.gui.blobdetection.AutomaticMarkerDetectionWorker
  • edu.stanford.rsl.conrad.physics.materials.Material (implements java.lang.Cloneable, java.io.Serializable)
    • edu.stanford.rsl.conrad.physics.materials.Compound
    • edu.stanford.rsl.conrad.physics.materials.Element
    • edu.stanford.rsl.conrad.physics.materials.Mixture
  • edu.stanford.rsl.conrad.physics.materials.database.MaterialsDB
  • edu.stanford.rsl.conrad.physics.materials.utils.MaterialUtils
  • edu.stanford.rsl.conrad.volume3d.MaxEigenValue (implements java.lang.Runnable)
  • edu.stanford.rsl.conrad.io.MotionFieldReader
  • edu.stanford.rsl.conrad.geometry.motion.MotionUtil
  • edu.stanford.rsl.conrad.cuda.MouseControl (implements java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener)
  • edu.stanford.rsl.conrad.opencl.rendering.MouseControl (implements java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener)
  • edu.stanford.rsl.conrad.physics.materials.database.NameToFormulaMap
  • edu.stanford.rsl.conrad.io.Nrrd_Writer (implements ij.plugin.PlugIn)
  • edu.stanford.rsl.conrad.phantom.NumericalSheppLogan3D
  • edu.stanford.rsl.conrad.physics.materials.database.OnlineMassAttenuationDB
  • edu.stanford.rsl.conrad.opencl.OpenCLForwardProjector (implements edu.stanford.rsl.apps.gui.Citeable, edu.stanford.rsl.apps.gui.GUIConfigurable)
  • edu.stanford.rsl.conrad.opencl.OpenCLForwardProjectorWithMotion (implements edu.stanford.rsl.apps.gui.Citeable, edu.stanford.rsl.apps.gui.GUIConfigurable)
  • edu.stanford.rsl.conrad.opencl.OpenCLRenderer
    • edu.stanford.rsl.conrad.opencl.OpenCLAppendBufferRenderer
    • edu.stanford.rsl.conrad.opencl.OpenCLYBufferRenderer
  • edu.stanford.rsl.tutorial.motionEstimation.OpenCLSplineRenderer
  • edu.stanford.rsl.conrad.opencl.OpenCLUtil
  • edu.stanford.rsl.tutorial.motionEstimation.OptimizeMotionField
  • edu.stanford.rsl.tutorial.parallel.ParallelBackprojector2D
  • edu.stanford.rsl.conrad.pipeline.ParallelImageFilterPipeliner
  • edu.stanford.rsl.conrad.pipeline.ParallelImageFilterSink (implements edu.stanford.rsl.conrad.pipeline.ProjectionSink, edu.stanford.rsl.conrad.pipeline.ProjectionSource, java.lang.Runnable)
  • edu.stanford.rsl.conrad.pipeline.ParallelProjectionDataSinkFeeder (implements edu.stanford.rsl.conrad.parallel.NamedParallelizableRunnable)
  • edu.stanford.rsl.tutorial.parallel.ParallelProjector2D
  • edu.stanford.rsl.tutorial.parallel.ParallelReconExample
  • edu.stanford.rsl.conrad.parallel.ParallelThreadExecutor
  • edu.stanford.rsl.conrad.volume3d.operations.ParallelVolumeOperation (implements java.lang.Cloneable, edu.stanford.rsl.conrad.parallel.ParallelizableRunnable)
    • edu.stanford.rsl.conrad.volume3d.operations.AddSlabs
    • edu.stanford.rsl.conrad.volume3d.operations.AddSlabScalar
    • edu.stanford.rsl.conrad.volume3d.operations.CopySlabData
    • edu.stanford.rsl.conrad.volume3d.operations.DivideSlabs
    • edu.stanford.rsl.conrad.volume3d.operations.FFTShifter
    • edu.stanford.rsl.conrad.volume3d.operations.MaxOfSlab
    • edu.stanford.rsl.conrad.volume3d.operations.MeanOfSlab
    • edu.stanford.rsl.conrad.volume3d.operations.MinOfSlab
    • edu.stanford.rsl.conrad.volume3d.operations.MinOfSlabs
    • edu.stanford.rsl.conrad.volume3d.operations.MultiplySlabs
    • edu.stanford.rsl.conrad.volume3d.operations.MultiplySlabScalar
    • edu.stanford.rsl.conrad.volume3d.operations.VoxelOperation
      • edu.stanford.rsl.conrad.volume3d.operations.InitializeGaussian
      • edu.stanford.rsl.conrad.volume3d.operations.InitializeHighPass
      • edu.stanford.rsl.conrad.volume3d.operations.InitializeLowPass
      • edu.stanford.rsl.conrad.volume3d.operations.InitializeSquaredCosine
      • edu.stanford.rsl.conrad.volume3d.operations.InitializeSquaredCosineR
      • edu.stanford.rsl.conrad.volume3d.operations.SquareRootSlab
      • edu.stanford.rsl.conrad.volume3d.operations.UpperLimitSlab
  • edu.stanford.rsl.conrad.utils.parsers.ParserFactory
  • edu.stanford.rsl.conrad.geometry.motion.ParzenWindowMotionField (implements edu.stanford.rsl.conrad.geometry.motion.MotionField, java.io.Serializable)
    • edu.stanford.rsl.conrad.geometry.motion.CombinedBreathingHeartMotionField
    • edu.stanford.rsl.conrad.geometry.motion.MixedSurfaceBSplineMotionField
    • edu.stanford.rsl.conrad.geometry.motion.OpenCLParzenWindowMotionField
    • edu.stanford.rsl.conrad.geometry.motion.TimeVariantSurfaceBSplineListMotionField
    • edu.stanford.rsl.conrad.geometry.motion.TimeVariantSurfaceBSplineMotionField
  • edu.stanford.rsl.conrad.phantom.renderer.PhantomRenderer (implements edu.stanford.rsl.apps.gui.Citeable, edu.stanford.rsl.apps.gui.GUIConfigurable, edu.stanford.rsl.conrad.pipeline.ProjectionSource)
    • edu.stanford.rsl.conrad.phantom.renderer.AnalyticPhantomProjector
    • edu.stanford.rsl.conrad.phantom.renderer.RampProjectionPhantomRenderer
    • edu.stanford.rsl.conrad.phantom.renderer.StreamingPhantomRenderer
      • edu.stanford.rsl.conrad.phantom.renderer.CylinderPhantomRenderer
      • edu.stanford.rsl.conrad.opencl.OpenCLProjectionPhantomRenderer
      • edu.stanford.rsl.conrad.phantom.renderer.SliceParallelVolumePhantomRenderer
        • edu.stanford.rsl.conrad.phantom.renderer.MetricPhantomRenderer
        • edu.stanford.rsl.conrad.phantom.renderer.ParallelProjectionPhantomRenderer
  • edu.stanford.rsl.conrad.physics.PhysicalObject (implements java.io.Serializable)
    • edu.stanford.rsl.conrad.phantom.electrondensity.QuadricDisk
  • edu.stanford.rsl.conrad.pipeline.PipelineTests
  • edu.stanford.rsl.conrad.geometry.motion.PointBasedMotionField (implements edu.stanford.rsl.conrad.geometry.motion.MotionField, java.io.Serializable)
  • jcuda.Pointer
    • edu.stanford.rsl.conrad.cuda.AdjustablePointer
  • edu.stanford.rsl.conrad.geometry.shapes.simple.PointND (implements java.io.Serializable, edu.stanford.rsl.conrad.geometry.transforms.Transformable)
    • edu.stanford.rsl.conrad.geometry.shapes.simple.Point2D
    • edu.stanford.rsl.conrad.geometry.shapes.simple.Point3D
      • edu.stanford.rsl.conrad.geometry.shapes.simple.VectorPoint3D
    • edu.stanford.rsl.conrad.geometry.shapes.simple.SortablePoint (implements java.lang.Comparable<T>)
      • edu.stanford.rsl.conrad.physics.PhysicalPoint
  • edu.stanford.rsl.apps.gui.pointselector.PointSelectorWorker (implements ij.ImageListener)
  • edu.stanford.rsl.conrad.data.iterators.PointwiseIterator
    • edu.stanford.rsl.conrad.data.iterators.PointwiseIterator1D
    • edu.stanford.rsl.conrad.data.iterators.PointwiseIterator2D
    • edu.stanford.rsl.conrad.data.iterators.PointwiseIterator3D
  • edu.stanford.rsl.conrad.data.PointwiseOperators
  • edu.stanford.rsl.conrad.physics.PolychromaticXRaySpectrum
  • edu.stanford.rsl.conrad.geometry.Projection (implements java.io.Serializable)
  • edu.stanford.rsl.tutorial.motionEstimation.ProjectionLoader
  • edu.stanford.rsl.conrad.geometry.test.ProjectionTest
  • edu.stanford.rsl.conrad.geometry.transforms.Quaternion
  • edu.stanford.rsl.tutorial.motionEstimation.RadialBasisFunctionInterpolation
  • edu.stanford.rsl.tutorial.RamLakFilteringExample
  • edu.stanford.rsl.conrad.filtering.rampfilters.RampFilter (implements java.lang.Cloneable, edu.stanford.rsl.apps.gui.GUIConfigurable, edu.stanford.rsl.conrad.io.SafeSerializable)
    • edu.stanford.rsl.conrad.filtering.rampfilters.ArbitraryRampFilter
    • edu.stanford.rsl.conrad.filtering.rampfilters.CosineRampFilter
    • edu.stanford.rsl.conrad.filtering.rampfilters.HammingRampFilter
    • edu.stanford.rsl.conrad.filtering.rampfilters.HanningRampFilter
    • edu.stanford.rsl.conrad.filtering.rampfilters.RamLakRampFilter
    • edu.stanford.rsl.conrad.filtering.rampfilters.SheppLoganRampFilter
      • edu.stanford.rsl.conrad.filtering.rampfilters.SheppLoganRampFilterWithRollOff
  • edu.stanford.rsl.conrad.rendering.RayDetector
  • edu.stanford.rsl.conrad.physics.materials.database.xmldatagenerators.RebuildDatabase
  • edu.stanford.rsl.conrad.physics.materials.database.xmldatagenerators.RebuildMaps
  • edu.stanford.rsl.conrad.physics.materials.database.xmldatagenerators.RebuildMaterialDatabase
  • edu.stanford.rsl.apps.gui.RegistryEditor.MultilineTableCell (implements javax.swing.table.TableCellRenderer)
  • edu.stanford.rsl.conrad.utils.RegKeys
  • edu.stanford.rsl.conrad.geometry.Rotations
  • edu.stanford.rsl.conrad.numerics.test.RQTest
  • edu.stanford.rsl.tutorial.motionEstimation.RunMotionEstimation
  • edu.stanford.rsl.conrad.reconstruction.iterative.SeparableFootprints
  • edu.stanford.rsl.conrad.geometry.SeparableFootprints
  • edu.stanford.rsl.conrad.phantom.SheppLogan3D
  • edu.stanford.rsl.conrad.numerics.SimpleMatrix (implements java.io.Serializable)
  • edu.stanford.rsl.conrad.numerics.test.SimpleMatrixTest
  • edu.stanford.rsl.conrad.geometry.motion.SimpleMotionField (implements edu.stanford.rsl.conrad.geometry.motion.MotionField, java.io.Serializable)
    • edu.stanford.rsl.conrad.geometry.motion.AffineMotionField
    • edu.stanford.rsl.conrad.geometry.motion.CompressionMotionField
    • edu.stanford.rsl.conrad.geometry.motion.ConstantMotionField
    • edu.stanford.rsl.conrad.geometry.motion.DualMotionField
    • edu.stanford.rsl.conrad.geometry.motion.PlanarMotionField
    • edu.stanford.rsl.conrad.geometry.motion.RotationMotionField
      • edu.stanford.rsl.conrad.geometry.motion.MovingCenterRotationMotionField
    • edu.stanford.rsl.conrad.geometry.motion.VICONMarkerMotionField
  • edu.stanford.rsl.conrad.numerics.SimpleOperators
  • edu.stanford.rsl.conrad.numerics.test.SimpleOperatorsTest
  • edu.stanford.rsl.conrad.numerics.SimpleVector (implements java.io.Serializable)
  • edu.stanford.rsl.conrad.numerics.test.SimpleVectorTest
  • edu.stanford.rsl.conrad.phantom.workers.SliceWorker (implements edu.stanford.rsl.apps.gui.Citeable, java.lang.Cloneable, edu.stanford.rsl.apps.gui.GUIConfigurable, edu.stanford.rsl.conrad.parallel.NamedParallelizableRunnable)
    • edu.stanford.rsl.conrad.phantom.workers.AnalyticPhantom3DVolumeRenderer
    • edu.stanford.rsl.conrad.phantom.workers.AnalyticPhantomProjectorWorker
    • edu.stanford.rsl.conrad.phantom.workers.DiracProjectionPhantom
    • edu.stanford.rsl.conrad.phantom.workers.SheppLoganPhantomWorker
    • edu.stanford.rsl.conrad.geometry.splines.SurfaceBSplineVolumePhantom
    • edu.stanford.rsl.conrad.phantom.workers.VolumeOfInterestPhantom
  • edu.stanford.rsl.conrad.numerics.Solvers
  • edu.stanford.rsl.conrad.numerics.test.SolversTest
  • edu.stanford.rsl.conrad.geometry.splines.SplineTests
  • edu.stanford.rsl.conrad.utils.StatisticsUtil
  • edu.stanford.rsl.conrad.io.STLFileUtil
  • edu.stanford.rsl.conrad.fitting.Surface (implements java.io.Serializable)
    • edu.stanford.rsl.conrad.fitting.Quadric
  • edu.stanford.rsl.conrad.geometry.test.SurfaceTests
  • edu.stanford.rsl.conrad.utils.TessellationUtil
  • edu.stanford.rsl.conrad.geometry.transforms.test.TestAffineTransform
  • edu.stanford.rsl.apps.TestBob
  • edu.stanford.rsl.conrad.geometry.transforms.test.TestComboTransform
  • edu.stanford.rsl.conrad.numerics.test.TestExpressions
  • edu.stanford.rsl.apps.Testing
  • edu.stanford.rsl.conrad.utils.TestingTools
  • edu.stanford.rsl.conrad.physics.materials.materialsTest.TestMassAttenuationData
  • edu.stanford.rsl.conrad.opencl.TestOpenCL
  • edu.stanford.rsl.conrad.geometry.transforms.test.TestScaleRotate
  • edu.stanford.rsl.conrad.geometry.transforms.test.TestTranslation
  • edu.stanford.rsl.tutorial.motionEstimation.ThinPlateSplineInterpolation
  • java.lang.Thread (implements java.lang.Runnable)
    • edu.stanford.rsl.conrad.parallel.ParallelThread (implements edu.stanford.rsl.conrad.parallel.NamedParallelizableRunnable)
      • edu.stanford.rsl.conrad.parallel.SimpleParallelThread
      • edu.stanford.rsl.conrad.phantom.xcat.TessellationThread
  • edu.stanford.rsl.apps.gui.TimeLinePlot
  • edu.stanford.rsl.conrad.geometry.motion.timewarp.TimeWarper (implements java.io.Serializable)
    • edu.stanford.rsl.conrad.geometry.motion.timewarp.ConstantTimeWarper
    • edu.stanford.rsl.conrad.geometry.motion.timewarp.DualPhasePeriodicTimeWarper
    • edu.stanford.rsl.conrad.geometry.motion.timewarp.HarmonicTimeWarper
    • edu.stanford.rsl.conrad.geometry.motion.timewarp.IdentityTimeWarper
    • edu.stanford.rsl.conrad.geometry.motion.timewarp.PeriodicTimeWarper
    • edu.stanford.rsl.conrad.geometry.motion.timewarp.RestPhaseTimeWarper
    • edu.stanford.rsl.conrad.geometry.motion.timewarp.SigmoidTimeWarper
  • edu.stanford.rsl.conrad.geometry.trajectories.Trajectory (implements edu.stanford.rsl.conrad.io.SafeSerializable)
    • edu.stanford.rsl.conrad.geometry.trajectories.CircularTrajectory
    • edu.stanford.rsl.conrad.geometry.trajectories.ConfigFileBasedTrajectory (implements edu.stanford.rsl.conrad.io.ConfigFileParser)
      • edu.stanford.rsl.conrad.geometry.trajectories.DennerleinProjectionTableFileTrajectory
      • edu.stanford.rsl.conrad.geometry.trajectories.ProjectionTableFileTrajectory
      • edu.stanford.rsl.conrad.geometry.trajectories.SystemGeometryConfigFileTrajectory (implements edu.stanford.rsl.conrad.io.ConfigFileParser, edu.stanford.rsl.conrad.utils.ConfigurationUpdater)
    • edu.stanford.rsl.conrad.geometry.trajectories.ExtrapolatedTrajectory
    • edu.stanford.rsl.conrad.geometry.trajectories.MultiSweepTrajectory
  • javax.swing.TransferHandler (implements java.io.Serializable)
    • edu.stanford.rsl.apps.gui.FileTextFieldTransferHandler
  • edu.stanford.rsl.conrad.geometry.transforms.Transform (implements java.io.Serializable)
    • edu.stanford.rsl.conrad.geometry.transforms.ComboTransform
      • edu.stanford.rsl.conrad.geometry.transforms.AffineTransform
    • edu.stanford.rsl.conrad.geometry.transforms.ScaleRotate
    • edu.stanford.rsl.conrad.geometry.transforms.Translation
  • edu.stanford.rsl.conrad.opencl.GLCLDemo.UserSceneInteraction
  • edu.stanford.rsl.conrad.utils.UserUtil
  • edu.stanford.rsl.conrad.phantom.xcat.ViconAffineTransform
  • edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder (implements java.io.Serializable)
  • edu.stanford.rsl.conrad.utils.VisualizationUtil
  • edu.stanford.rsl.conrad.volume3d.Volume3D
    • edu.stanford.rsl.conrad.cuda.CUDAVolume3D
  • edu.stanford.rsl.conrad.reconstruction.voi.VolumeOfInterest (implements edu.stanford.rsl.conrad.io.ConfigFileParser, java.io.Serializable)
    • edu.stanford.rsl.conrad.reconstruction.voi.CylinderBasedVolumeOfInterest
    • edu.stanford.rsl.conrad.reconstruction.voi.PolygonBasedVolumeOfInterest (implements edu.stanford.rsl.conrad.io.ConfigFileParser, edu.stanford.rsl.conrad.io.SafeSerializable)
  • edu.stanford.rsl.conrad.volume3d.VolumeOperator
    • edu.stanford.rsl.conrad.cuda.CUDAVolumeOperator
    • edu.stanford.rsl.conrad.volume3d.ParallelVolumeOperator
  • edu.stanford.rsl.conrad.io.VTKMeshReader
  • edu.stanford.rsl.conrad.io.VTKVectorField
  • edu.stanford.rsl.tutorial.truncation.WaterCylinderFBPExample
  • edu.stanford.rsl.conrad.geometry.motion.WeightBearingBeadPositionBuilder (implements java.io.Serializable)
  • edu.stanford.rsl.conrad.physics.materials.WeightedAtomicComposition
  • edu.stanford.rsl.conrad.physics.materials.utils.WeightedAtomicComposition (implements java.io.Serializable)
  • edu.stanford.rsl.conrad.phantom.xcat.XCatMaterialGenerator
  • edu.stanford.rsl.conrad.phantom.xcat.XCatMetricPhantomCreator
  • edu.stanford.rsl.conrad.utils.XmlUtils
  • edu.stanford.rsl.conrad.physics.XRaySpectrum

Interface Hierarchy

• edu.stanford.rsl.apps.gui.Citeable
• edu.stanford.rsl.conrad.io.ConfigFileParser
• edu.stanford.rsl.conrad.utils.ConfigurationUpdater
• edu.stanford.rsl.tutorial.GridKernel
• edu.stanford.rsl.apps.gui.GUIConfigurable
• edu.stanford.rsl.conrad.geometry.motion.MotionField
• edu.stanford.rsl.conrad.cuda.MouseControlable
• edu.stanford.rsl.conrad.opencl.rendering.MouseControlable
• edu.stanford.rsl.conrad.opencl.OpenCLEvaluatable
• edu.stanford.rsl.conrad.pipeline.ProjectionSink
• edu.stanford.rsl.conrad.pipeline.ProjectionSource
• java.lang.Runnable
  • edu.stanford.rsl.conrad.parallel.NamedParallelizableRunnable
  • edu.stanford.rsl.conrad.parallel.ParallelizableRunnable
    • edu.stanford.rsl.conrad.parallel.NamedParallelizableRunnable
• edu.stanford.rsl.conrad.utils.parsers.SceneFileParser
• java.io.Serializable
  • edu.stanford.rsl.conrad.io.SafeSerializable
• edu.stanford.rsl.conrad.utils.parsers.SliceWorkerParser
• edu.stanford.rsl.conrad.geometry.transforms.Transformable
• edu.stanford.rsl.apps.gui.UpdateableGUI

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • edu.stanford.rsl.conrad.reconstruction.SeparableFootprintsBasedReconstruction.FootprintsType
    • edu.stanford.rsl.conrad.cuda.CUDAFFTVolumeHandle.CUFFTResult
    • edu.stanford.rsl.conrad.physics.EnergyDependentCoefficients.Material
    • edu.stanford.rsl.conrad.numerics.SimpleVector.VectorNormType
    • edu.stanford.rsl.conrad.numerics.SimpleMatrix.MatrixNormType
    • edu.stanford.rsl.conrad.numerics.SimpleMatrix.InversionType
    • edu.stanford.rsl.conrad.reconstruction.iterative.SeparableFootprintsBasedReconstruction.FootprintsType
    • edu.stanford.rsl.conrad.volume3d.VolumeOperator.FILTER_TYPE
    • edu.stanford.rsl.conrad.geometry.Rotations.BasicAxis
    • edu.stanford.rsl.conrad.geometry.Projection.CameraAxisDirection
    • edu.stanford.rsl.tutorial.motionEstimation.RadialBasisFunctionInterpolation.RBF
    • edu.stanford.rsl.conrad.physics.materials.utils.AttenuationType
    • edu.stanford.rsl.conrad.physics.materials.utils.AttenuationRetrievalMode
    • edu.stanford.rsl.conrad.calibration.CalibrationBead.Property