edu.stanford.rsl.apps.gui.blobdetection

Class MarkerDetectionWorker

java.lang.Object

edu.stanford.rsl.apps.gui.blobdetection.MarkerDetectionWorker

Direct Known Subclasses:

AutomaticMarkerDetectionWorker

public class MarkerDetectionWorker
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
MarkerDetectionWorker()
MarkerDetectionWorker(java.util.ArrayList<java.util.ArrayList<double[]>> twoDInit)

Method Summary

Methods

Modifier and Type	Method and Description
void	configure()
java.lang.String	getFilename()
java.util.ArrayList<java.util.ArrayList<double[]>>	getMeasuredTwoDPoints()
java.util.ArrayList<java.util.ArrayList<double[]>>	getMergedTwoDPositions()
double[]	getRadii()
java.util.ArrayList<double[]>	getReferenceThreeDPoints()
java.util.ArrayList<java.util.ArrayList<double[]>>	getReferenceTwoDPoints()
void	run()
void	setFilename(java.lang.String s)
void	setImage(ij.ImagePlus img)
void	setParameters(double binThresh, double circularity, double lowGradThresh, double distance, java.lang.String radii)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MarkerDetectionWorker

public MarkerDetectionWorker()

MarkerDetectionWorker

public MarkerDetectionWorker(java.util.ArrayList<java.util.ArrayList<double[]>> twoDInit)

Method Detail

run

public void run()

getMergedTwoDPositions

public java.util.ArrayList<java.util.ArrayList<double[]>> getMergedTwoDPositions()

configure

public void configure()
               throws java.lang.Exception

Throws:

java.lang.Exception

setParameters

public void setParameters(double binThresh,
                 double circularity,
                 double lowGradThresh,
                 double distance,
                 java.lang.String radii)

getFilename

public java.lang.String getFilename()

setFilename

public void setFilename(java.lang.String s)

setImage

public void setImage(ij.ImagePlus img)

getMeasuredTwoDPoints

public java.util.ArrayList<java.util.ArrayList<double[]>> getMeasuredTwoDPoints()

getReferenceTwoDPoints

public java.util.ArrayList<java.util.ArrayList<double[]>> getReferenceTwoDPoints()

getReferenceThreeDPoints

public java.util.ArrayList<double[]> getReferenceThreeDPoints()

getRadii

public double[] getRadii()