C-Index

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

C

c(double) - Static method in class edu.stanford.rsl.conrad.physics.XRaySpectrum: Returns the Thomson-Whiddington constant using a rational approximation (keV2 cm2 / g).
C_kg_R - Static variable in class edu.stanford.rsl.conrad.physics.Constants: Coul/kg/R for air
CalibrationBead - Class in edu.stanford.rsl.conrad.calibration
CalibrationBead(double, double) - Constructor for class edu.stanford.rsl.conrad.calibration.CalibrationBead
CalibrationBead.Property - Enum in edu.stanford.rsl.conrad.calibration
calVoltage - Variable in class edu.stanford.rsl.conrad.io.BetaConfigFile
canImport(TransferHandler.TransferSupport) - Method in class edu.stanford.rsl.apps.gui.FileTextFieldTransferHandler
castRay(AbstractCurve) - Method in class edu.stanford.rsl.conrad.rendering.AbstractRayTracer: Method to cast a ray through the scene.
CatheterPhantom - Class in edu.stanford.rsl.conrad.phantom: Phantom to test Subtract-and-Shift (SaS).
CatheterPhantom() - Constructor for class edu.stanford.rsl.conrad.phantom.CatheterPhantom
CatphanCTP528 - Class in edu.stanford.rsl.conrad.phantom: MTF phantom defined by Lars Wigstroem.
CatphanCTP528() - Constructor for class edu.stanford.rsl.conrad.phantom.CatphanCTP528: Construtor which creates the phnatom.
centers - Variable in class edu.stanford.rsl.conrad.io.NrrdFileInfo
changedUpdate(DocumentEvent) - Method in class edu.stanford.rsl.apps.gui.blobdetection.MarkerDetection
characteristic(double[], String, double, double) - Static method in class edu.stanford.rsl.conrad.physics.XRaySpectrum: Generates characteristic lines and adds them to the fluence spectrum.
characteristicLine(double[], String, double, double, double, double, double) - Static method in class edu.stanford.rsl.conrad.physics.XRaySpectrum: Return the vector spectrum phi that contains only the specified characteristic line with the appropriate split between the nearest two bins.
CHEBYSHEV - Static variable in class edu.stanford.rsl.conrad.filtering.rampfilters.IRRFilter
chooseIndex(String, String, Object[], Object) - Static method in class edu.stanford.rsl.conrad.utils.UserUtil: Asks the User to select an Object from a given array of Objects.
chooseObject(String, String, Object[], Object) - Static method in class edu.stanford.rsl.conrad.utils.UserUtil: Asks the User to select an Object from a given array of Objects.
CircularTrajectory - Class in edu.stanford.rsl.conrad.geometry.trajectories
CircularTrajectory() - Constructor for class edu.stanford.rsl.conrad.geometry.trajectories.CircularTrajectory
CircularTrajectory(Trajectory) - Constructor for class edu.stanford.rsl.conrad.geometry.trajectories.CircularTrajectory
Citeable - Interface in edu.stanford.rsl.apps.gui: Interface to model citeable objects
cleanUp() - Method in class edu.stanford.rsl.conrad.cuda.CUDAFFTVolumeHandle
cleanup() - Method in class edu.stanford.rsl.conrad.cuda.CUDAVolumeOperator
cleanUp() - Method in class edu.stanford.rsl.conrad.volume3d.FFTVolumeHandle: Cleans up the memory.
cleanUp() - Method in class edu.stanford.rsl.conrad.volume3d.JTransformsFFTVolumeHandle
clear() - Method in class edu.stanford.rsl.conrad.geometry.shapes.compound.CompoundShape
clear() - Method in class edu.stanford.rsl.conrad.geometry.shapes.compound.LinearOctree
clear() - Method in class edu.stanford.rsl.conrad.rendering.PrioritizableScene
clear() - Method in class edu.stanford.rsl.conrad.rendering.SimpleScene
clearObjectsOnly() - Method in class edu.stanford.rsl.conrad.rendering.PrioritizableScene
clone() - Method in class edu.stanford.rsl.conrad.data.Grid: Deep copy the object
clone() - Method in class edu.stanford.rsl.conrad.data.Grid1D
clone() - Method in class edu.stanford.rsl.conrad.data.Grid2D
clone() - Method in class edu.stanford.rsl.conrad.data.Grid2DComplex
clone() - Method in class edu.stanford.rsl.conrad.data.Grid3D
clone() - Method in class edu.stanford.rsl.conrad.filtering.AbsoluteValueTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.ApplyHounsfieldScaling
clone() - Method in class edu.stanford.rsl.conrad.filtering.ApplyLambdaWeightingTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.AtractResidual2D
clone() - Method in class edu.stanford.rsl.conrad.filtering.BilateralFilteringTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.CosineWeightingTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.DynamicDensityOptimizationScatterCorrectionTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.ExtremeValueTruncationFilter
clone() - Method in class edu.stanford.rsl.conrad.filtering.FastRadialSymmetryTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.FiducialMarkerDetectionTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.Filtering2DTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.HilbertFilteringTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.HorizontalFlippingTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.HoughFilteringTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.ImageConstantMathFilter
clone() - Method in class edu.stanford.rsl.conrad.filtering.ImageFilteringTool: Creates a clone of the filter with the same configuration as the original.
clone() - Method in class edu.stanford.rsl.conrad.filtering.ImageJParallelTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.ImageMathFilter
clone() - Method in class edu.stanford.rsl.conrad.filtering.IndividualImageFilteringTool: All ImageFilteringTools need to be Cloneable in order to enable multiple processor usage.
clone() - Method in class edu.stanford.rsl.conrad.filtering.KinectBasedDetectorSaturationCorrectionTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.LaplaceFilteringTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.LogPoissonNoiseFilteringTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.MeanFilteringTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.MeanMarkerBasedProjectionShiftingTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.MeanMarkerBasedProjectionShiftingToolForXCAT
clone() - Method in class edu.stanford.rsl.conrad.filtering.MedianFilteringTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.AnisotropicStructureTensorNoiseFilter
clone() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.BilateralFilter3D
clone() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.blocks.AnisotropicStructureTensorBlock
clone() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.blocks.BilateralFilter3DBlock
clone() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.blocks.IdentityTransformBlock
clone() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.blocks.ImageProcessingBlock
clone() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.blocks.IterativeReconstructionBlock
clone() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.BlockWiseStructureTensor
clone() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.DiaphragmTrackingTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.IdentityTransformFilter
clone() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.IterativeReconstructionFilter
clone() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.Lambda3DDerivativeFilter
clone() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.ProjectionSortingFilter
clone() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.Triangulation
clone() - Method in class edu.stanford.rsl.conrad.filtering.NonLinearGainCorrectionTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.NumericalDerivativeComputationTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.NumericalLinewiseAntiderivativeFilteringTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.PoissonNoiseFilteringTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.PrimaryModulationScatterCorrectionTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.RampFilteringTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.ArbitraryRampFilter
clone() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.CosineRampFilter
clone() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.HammingRampFilter
clone() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.HanningRampFilter
clone() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.RamLakRampFilter
clone() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.RampFilter
clone() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.SheppLoganRampFilter
clone() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.SheppLoganRampFilterWithRollOff
clone() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.NooWeightingTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.OSCARWeightingTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.ParkerWeightingTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.SilverWeightingTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.WesargWeightingTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.Rotate90DegreeLeftTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.ThinPlateSplinesBasedProjectionWarpingTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.ThinPlateSplinesBasedProjectionWarpingToolForXCAT
clone() - Method in class edu.stanford.rsl.conrad.filtering.TruncationCorrectionTool
clone() - Method in class edu.stanford.rsl.conrad.filtering.VolumeAttenuationFactorCorrectionTool
clone() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.PointND
clone() - Method in class edu.stanford.rsl.conrad.geometry.splines.SurfaceBSplineVolumePhantom
clone() - Method in class edu.stanford.rsl.conrad.geometry.transforms.AffineTransform
clone() - Method in class edu.stanford.rsl.conrad.geometry.transforms.ComboTransform
clone() - Method in class edu.stanford.rsl.conrad.geometry.transforms.Quaternion
clone() - Method in class edu.stanford.rsl.conrad.geometry.transforms.ScaleRotate
clone() - Method in class edu.stanford.rsl.conrad.geometry.transforms.Transform
clone() - Method in class edu.stanford.rsl.conrad.geometry.transforms.Translation
clone() - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix
clone() - Method in class edu.stanford.rsl.conrad.numerics.SimpleVector
clone() - Method in class edu.stanford.rsl.conrad.phantom.workers.AnalyticPhantom3DVolumeRenderer
clone() - Method in class edu.stanford.rsl.conrad.phantom.workers.AnalyticPhantomProjectorWorker
clone() - Method in class edu.stanford.rsl.conrad.phantom.workers.DiracProjectionPhantom
clone() - Method in class edu.stanford.rsl.conrad.phantom.workers.SheppLoganPhantomWorker
clone() - Method in class edu.stanford.rsl.conrad.phantom.workers.SliceWorker
clone() - Method in class edu.stanford.rsl.conrad.phantom.workers.VolumeOfInterestPhantom
clone() - Method in class edu.stanford.rsl.conrad.physics.materials.Material
clone() - Method in class edu.stanford.rsl.conrad.pipeline.IndividualImagePipelineFilteringTool
clone() - Method in class edu.stanford.rsl.conrad.reconstruction.FBPReconstructionFilter
clone() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.IterativeReconstruction
clone() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.ModelBasedIterativeReconstruction
clone() - Method in class edu.stanford.rsl.conrad.reconstruction.IterativeReconstruction
clone() - Method in class edu.stanford.rsl.conrad.reconstruction.ModelBasedIterativeReconstruction
clone() - Method in class edu.stanford.rsl.conrad.reconstruction.SimpleIterativeReconstruction
clone() - Method in class edu.stanford.rsl.conrad.reconstruction.VOIBasedReconstructionFilter
clone() - Method in class edu.stanford.rsl.conrad.volume3d.operations.AddSlabs
clone() - Method in class edu.stanford.rsl.conrad.volume3d.operations.AddSlabScalar
clone() - Method in class edu.stanford.rsl.conrad.volume3d.operations.CopySlabData
clone() - Method in class edu.stanford.rsl.conrad.volume3d.operations.DivideSlabs
clone() - Method in class edu.stanford.rsl.conrad.volume3d.operations.FFTShifter
clone() - Method in class edu.stanford.rsl.conrad.volume3d.operations.InitializeGaussian
clone() - Method in class edu.stanford.rsl.conrad.volume3d.operations.InitializeHighPass
clone() - Method in class edu.stanford.rsl.conrad.volume3d.operations.InitializeLowPass
clone() - Method in class edu.stanford.rsl.conrad.volume3d.operations.InitializeSquaredCosine
clone() - Method in class edu.stanford.rsl.conrad.volume3d.operations.InitializeSquaredCosineR
clone() - Method in class edu.stanford.rsl.conrad.volume3d.operations.MaxOfSlab
clone() - Method in class edu.stanford.rsl.conrad.volume3d.operations.MeanOfSlab
clone() - Method in class edu.stanford.rsl.conrad.volume3d.operations.MinOfSlab
clone() - Method in class edu.stanford.rsl.conrad.volume3d.operations.MinOfSlabs
clone() - Method in class edu.stanford.rsl.conrad.volume3d.operations.MultiplySlabs
clone() - Method in class edu.stanford.rsl.conrad.volume3d.operations.MultiplySlabScalar
clone() - Method in class edu.stanford.rsl.conrad.volume3d.operations.ParallelVolumeOperation
clone() - Method in class edu.stanford.rsl.conrad.volume3d.operations.SquareRootSlab
clone() - Method in class edu.stanford.rsl.conrad.volume3d.operations.UpperLimitSlab
cloneList(List<PointND>) - Static method in class edu.stanford.rsl.conrad.geometry.splines.SurfaceBSpline
close() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.MultiProjectionFilter
close() - Method in class edu.stanford.rsl.conrad.io.FileProjectionSource
close() - Method in class edu.stanford.rsl.conrad.io.ImagePlusDataSink
close() - Method in class edu.stanford.rsl.conrad.io.IndividualFilesProjectionDataSink
close() - Method in class edu.stanford.rsl.conrad.pipeline.DevNullSink
close() - Method in class edu.stanford.rsl.conrad.pipeline.ParallelImageFilterSink
close() - Method in interface edu.stanford.rsl.conrad.pipeline.ProjectionSink
close() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.ModelBasedIterativeReconstruction
close() - Method in class edu.stanford.rsl.conrad.reconstruction.ModelBasedIterativeReconstruction
close() - Method in class edu.stanford.rsl.conrad.reconstruction.SuperShortScanBackprojection: Deprecated.
close() - Method in class edu.stanford.rsl.conrad.reconstruction.VOIBasedReconstructionFilter
COHERENT_SCATTER - Static variable in class edu.stanford.rsl.conrad.physics.absorption.AbsorptionModel
colNoLAJCX() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
colNoLAJCY() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
colNoLAJCZ() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
colNoLHJCX() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
colNoLHJCY() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
colNoLHJCZ() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
colNoLKJCX() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
colNoLKJCY() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
colNoLKJCZ() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
colNoLKneeAngleX() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
colNoLKNEX() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
colNoLKNEY() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
colNoLKNEZ() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
colNoLPATX() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
colNoLPATY() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
colNoLPATZ() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
colNoRAJCX() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
colNoRAJCY() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
colNoRAJCZ() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
colNoRHJCX() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
colNoRHJCY() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
colNoRHJCZ() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
colNoRKJCX() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
colNoRKJCY() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
colNoRKJCZ() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
colNoRKneeAngleX() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
colNoRKNEX() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
colNoRKNEY() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
colNoRKNEZ() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
colNoRPATX() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
colNoRPATY() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
colNoRPATZ() - Method in class edu.stanford.rsl.conrad.phantom.xcat.ViconMarkerBuilder
CombinedBreathingHeartMotionField - Class in edu.stanford.rsl.conrad.geometry.motion
CombinedBreathingHeartMotionField(CombinedBreathingHeartScene, double) - Constructor for class edu.stanford.rsl.conrad.geometry.motion.CombinedBreathingHeartMotionField
CombinedBreathingHeartScene - Class in edu.stanford.rsl.conrad.phantom.xcat
CombinedBreathingHeartScene() - Constructor for class edu.stanford.rsl.conrad.phantom.xcat.CombinedBreathingHeartScene
ComboTransform - Class in edu.stanford.rsl.conrad.geometry.transforms: Class to model a chain of transforms.
ComboTransform() - Constructor for class edu.stanford.rsl.conrad.geometry.transforms.ComboTransform
ComboTransform(Transform...) - Constructor for class edu.stanford.rsl.conrad.geometry.transforms.ComboTransform: Create Combo Transform.
CompareGrayValues - Class in edu.stanford.rsl.apps.gui.roi
CompareGrayValues() - Constructor for class edu.stanford.rsl.apps.gui.roi.CompareGrayValues
compareTo(CalibrationBead) - Method in class edu.stanford.rsl.conrad.calibration.CalibrationBead
compareTo(SortablePoint) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.SortablePoint
CompensationWeights - Class in edu.stanford.rsl.tutorial.fan.redundancy
CompensationWeights(double, double, double, double, double) - Constructor for class edu.stanford.rsl.tutorial.fan.redundancy.CompensationWeights
Complex - Class in edu.stanford.rsl.conrad.data: Copyright (c) 2013 the authors listed at the following URL, and/or the authors of referenced articles or incorporated external code: http://en.literateprograms.org/Complex_numbers_(Java)?action=history&offset=20120912160954 Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
Complex() - Constructor for class edu.stanford.rsl.conrad.data.Complex
Complex(double, double) - Constructor for class edu.stanford.rsl.conrad.data.Complex
Complex(float[], int) - Constructor for class edu.stanford.rsl.conrad.data.Complex
Complex(Complex) - Constructor for class edu.stanford.rsl.conrad.data.Complex
complexOneOverPiT(int) - Static method in class edu.stanford.rsl.conrad.utils.FFTUtil
complexSignum(double[]) - Static method in class edu.stanford.rsl.conrad.utils.FFTUtil: Computes the complex signum for the given array.
complexToFHT(FloatProcessor, FloatProcessor) - Static method in class edu.stanford.rsl.conrad.utils.FHTUtil: Converts real and imaginary parts of an FFT to Hartley domain.
CompositionToAbsorptionEdgeMap - Class in edu.stanford.rsl.conrad.physics.materials.database: Retrieves or calculate all the absorption edges of a material based on its atomic composition.
CompositionToAbsorptionEdgeMap() - Constructor for class edu.stanford.rsl.conrad.physics.materials.database.CompositionToAbsorptionEdgeMap
Compound - Class in edu.stanford.rsl.conrad.physics.materials: Class to model a compound
Compound() - Constructor for class edu.stanford.rsl.conrad.physics.materials.Compound
CompoundExpression - Class in edu.stanford.rsl.conrad.numerics.mathexpressions: Class to model Mathematical Expressions consisting of 2 or more expressions.
CompoundExpression(AbstractMathExpression, AbstractMathExpression, char) - Constructor for class edu.stanford.rsl.conrad.numerics.mathexpressions.CompoundExpression
CompoundShape - Class in edu.stanford.rsl.conrad.geometry.shapes.compound
CompoundShape() - Constructor for class edu.stanford.rsl.conrad.geometry.shapes.compound.CompoundShape
CompressionMotionField - Class in edu.stanford.rsl.conrad.geometry.motion: Models a MotionField as two points and a normal vector.
CompressionMotionField(PointND, PointND, SimpleVector) - Constructor for class edu.stanford.rsl.conrad.geometry.motion.CompressionMotionField
computeAnisotropicFilteredVolume(Volume3D, float, float, float, float, float, int, float, float, float, float) - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.AnisotropicFilterFunction
computeAverageIncrement(double[]) - Static method in class edu.stanford.rsl.conrad.utils.DoubleArrayUtil: Computes the average increment of the array
computeAverageIncrement(float[]) - Static method in class edu.stanford.rsl.conrad.utils.FloatArrayUtil: Computes the average increment of the array
computeBounds() - Method in class edu.stanford.rsl.conrad.geometry.splines.BSpline: Computes the bounding box for the curve.
computeCameraCenter() - Method in class edu.stanford.rsl.conrad.geometry.Projection: Compute the camera center in world coordinates.
computeCanonicalProjectionMatrix(float[], float[], float[], Matrix) - Method in class edu.stanford.rsl.conrad.cuda.CUDAForwardProjector: Method: computeCanonicalProjectionMatrix
Author: Sungwon Yoon
Description:
computeCanonicalProjectionMatrix(float[], float[], float[], Matrix) - Method in class edu.stanford.rsl.conrad.cuda.CUDAForwardProjectorWithMotion: Method: computeCanonicalProjectionMatrix
Author: Sungwon Yoon
Description:
computeCanonicalProjectionMatrix(float[], float[], float[], Matrix) - Method in class edu.stanford.rsl.conrad.opencl.OpenCLForwardProjector: Method: computeCanonicalProjectionMatrix
Author: Sungwon Yoon
Description:
computeCanonicalProjectionMatrix(float[], float[], float[], Matrix) - Method in class edu.stanford.rsl.conrad.opencl.OpenCLForwardProjectorWithMotion: Method: computeCanonicalProjectionMatrix
Author: Sungwon Yoon
Description:
computeComplexFrequencies(double[], double) - Method in class edu.stanford.rsl.apps.gui.roi.Measure3DBeadMTF
computeCTValue(double) - Static method in class edu.stanford.rsl.conrad.physics.Constants: converts from mass density to CT value
computeDepth(SimpleVector) - Method in class edu.stanford.rsl.conrad.geometry.Projection: Computes a given point's Eucledian distance to the camera.
computeDistance(PointND) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Plane3D: Computes the distance of a point to this plane.
computeDistance(PointND, PointND) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Plane3D: Computes the distance of a point to this plane and returns the closest point to the given point on the plane.
computeDistanceTo(PointND) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.StraightLine: Computes the closest distance between the line and the point p.
computeGLMatrices(int, int, int, int, double, double, double[], double[]) - Method in class edu.stanford.rsl.conrad.geometry.Projection: Compute the 4x4 OpenGL projection and modelview matrices from this Projection.
computeGLMatrices(int, int, int, int, SimpleVector, SimpleVector, double[], double[]) - Method in class edu.stanford.rsl.conrad.geometry.Projection: Compute the 4x4 OpenGL projection and modelview matrices from this Projection.
computeInitialUV(PointND) - Method in class edu.stanford.rsl.conrad.geometry.splines.SurfaceBSpline: Computes approximate u, v coordinates to of the closest control point to the given point.
computeIsoCenter() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory: Computes the iso center of the current trajectory.
computeIsoCenterOld() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory: computes the iso center of the current trajectory.
computeMassDensity(double) - Static method in class edu.stanford.rsl.conrad.physics.Constants: converts from CT values to mass density
computeMean(double[], int, int) - Static method in class edu.stanford.rsl.conrad.utils.DoubleArrayUtil: computes the mean of the array "values" on the interval [start, end].
computeMean(double[]) - Static method in class edu.stanford.rsl.conrad.utils.DoubleArrayUtil: Computes the mean value of a given array
computeMean(float[], int, int) - Static method in class edu.stanford.rsl.conrad.utils.FloatArrayUtil: computes the mean of the array "values" on the interval [start, end].
computeMean(float[]) - Static method in class edu.stanford.rsl.conrad.utils.FloatArrayUtil: Computes the mean value of a given array
computeMeanAndStandardDeviation(ImageProcessor) - Static method in class edu.stanford.rsl.conrad.utils.ImageUtil: Normalizes an ImageProcessor to mean 0 and standard deviation 1
computeMeanError(CLBuffer<FloatBuffer>, double[], double[], double[], int, boolean) - Method in class edu.stanford.rsl.conrad.opencl.TestOpenCL
computeMeanSquareError(double[], double[]) - Static method in class edu.stanford.rsl.conrad.utils.DoubleArrayUtil: computes the mean square error of array x to array y
computeMeanSquareError(float[], float[]) - Static method in class edu.stanford.rsl.conrad.utils.FloatArrayUtil: computes the mean square error of array x to array y
computeMinMaxValues(CLBuffer<FloatBuffer>, CLBuffer<FloatBuffer>) - Method in class edu.stanford.rsl.conrad.opencl.OpenCLRenderer
computeModelMTF(double[], double, int) - Method in class edu.stanford.rsl.apps.gui.roi.Measure3DBeadMTF
computeMTF(double[], int) - Method in class edu.stanford.rsl.apps.gui.roi.Measure3DBeadMTF
computeOffset(SimpleVector) - Method in class edu.stanford.rsl.conrad.geometry.Projection: This convenience method computes the offset from the image center to the principal point.
computeP() - Method in class edu.stanford.rsl.conrad.geometry.Projection: Computes the 3x4 projection matrix $\mathbf{P} = s \cdot \mathbf{K} \cdot \left(\begin{array}{c|c} \mathbf{R} & \mathbf{t} \end{array}\right)$ and returns it.
computeParkerWeights1D(int) - Method in class edu.stanford.rsl.conrad.filtering.redundancy.ParkerWeightingTool: computes the set of Parker weights for the given projection
computeParkerWeights1D(double) - Method in class edu.stanford.rsl.conrad.filtering.redundancy.ParkerWeightingTool: Returns the row weights for the given angle (in radians);
computeParkerWeights1D(int) - Method in class edu.stanford.rsl.conrad.filtering.redundancy.WesargWeightingTool
computePointWiseDifference(ArrayList<PointND>, ArrayList<PointND>) - Static method in class edu.stanford.rsl.conrad.utils.DoublePrecisionPointUtil: Computes the total distance between two list of points.
computePrincipalAxis() - Method in class edu.stanford.rsl.conrad.geometry.Projection: Compute the principal axis direction in world coordinates.
computeRansac() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.DiaphragmTrackingTool: This method computes a random sample consenus.
computeRayDirection(SimpleVector) - Method in class edu.stanford.rsl.conrad.geometry.Projection: Computes the direction of the ray corresponding to a given pixel.
computeRootMeanSquareError(double[], double[]) - Static method in class edu.stanford.rsl.conrad.utils.DoubleArrayUtil: computes the root mean square error of array x to array y
computeRootMeanSquareError(float[], float[]) - Static method in class edu.stanford.rsl.conrad.utils.FloatArrayUtil: computes the root mean square error of array x to array y
computeScanRange() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.ParkerWeightingTool: computes the scan range of the scan, note that this is only valid if the scan range is less or equal to 360 degrees
computeSourceToDetectorDistance(SimpleVector) - Method in class edu.stanford.rsl.conrad.geometry.Projection: This convenience method computes the source-to-detector distance in world corrdinate dimensions.
computeSSIMArrays(float[], float[]) - Static method in class edu.stanford.rsl.conrad.utils.FloatArrayUtil: computes the correlation coefficient between two arrays after Pearson
computeSSIMDoubleArrays(double[], double[]) - Static method in class edu.stanford.rsl.conrad.utils.DoubleArrayUtil: computes the correlation coefficient between two arrays after Pearson
computeStddev(double[], double) - Static method in class edu.stanford.rsl.conrad.utils.DoubleArrayUtil: Computes the standard deviation given an array and its mean value
computeStddev(float[], float) - Static method in class edu.stanford.rsl.conrad.utils.FloatArrayUtil: Computes the standard deviation given an array and its mean value
computeStddev(float[], float, int, int) - Static method in class edu.stanford.rsl.conrad.utils.FloatArrayUtil
computeStructureTensor(Volume3D, int, float, float) - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.AnisotropicFilterFunction
concatenateHorizontally(SimpleVector...) - Static method in class edu.stanford.rsl.conrad.numerics.SimpleOperators: Creates a new matrix which is composed of all input column vectors, stacked next to each other.
concatenateVertically(SimpleVector...) - Static method in class edu.stanford.rsl.conrad.numerics.SimpleOperators: Creates a new vector which is composed of all input vectors, stacked over each other.
concordanceCorrelateArrays(float[], float[]) - Static method in class edu.stanford.rsl.conrad.utils.FloatArrayUtil: computes the concordance correlation coefficient between two arrays
concordanceCorrelateDoubleArrays(double[], double[]) - Static method in class edu.stanford.rsl.conrad.utils.DoubleArrayUtil: computes the concordance correlation coefficient between two arrays
cond() - Method in class edu.stanford.rsl.conrad.numerics.DecompositionSVD: Two norm condition number
conditionNumber(SimpleMatrix.MatrixNormType) - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix
Cone - Class in edu.stanford.rsl.conrad.geometry.shapes.simple: Creates a Cone.
Cone() - Constructor for class edu.stanford.rsl.conrad.geometry.shapes.simple.Cone
Cone(double, double, double) - Constructor for class edu.stanford.rsl.conrad.geometry.shapes.simple.Cone
ConeBeamBackprojector - Class in edu.stanford.rsl.tutorial.cone
ConeBeamBackprojector() - Constructor for class edu.stanford.rsl.tutorial.cone.ConeBeamBackprojector
ConeBeamCosineFilter - Class in edu.stanford.rsl.tutorial.cone
ConeBeamCosineFilter(double, double, double, double, double) - Constructor for class edu.stanford.rsl.tutorial.cone.ConeBeamCosineFilter
ConeBeamProjector - Class in edu.stanford.rsl.tutorial.cone
ConeBeamProjector() - Constructor for class edu.stanford.rsl.tutorial.cone.ConeBeamProjector
ConeBeamReconstructionExample - Class in edu.stanford.rsl.tutorial.cone: Simple example that computes and displays a cone-beam reconstruction.
ConeBeamReconstructionExample() - Constructor for class edu.stanford.rsl.tutorial.cone.ConeBeamReconstructionExample
ConfigFile - Class in edu.stanford.rsl.conrad.io: Class to model an abstract config file.
ConfigFile() - Constructor for class edu.stanford.rsl.conrad.io.ConfigFile
ConfigFileBasedTrajectory - Class in edu.stanford.rsl.conrad.geometry.trajectories: Abstract class to create config file-based geometry sources.
ConfigFileBasedTrajectory(Trajectory) - Constructor for class edu.stanford.rsl.conrad.geometry.trajectories.ConfigFileBasedTrajectory
ConfigFileParser - Interface in edu.stanford.rsl.conrad.io: Interface for classes which parse config files.
Configuration - Class in edu.stanford.rsl.conrad.utils: Configuration is used to import Conrad configurations more easily and to store them globally.
Configuration() - Constructor for class edu.stanford.rsl.conrad.utils.Configuration
ConfigurationFrame - Class in edu.stanford.rsl.apps.gui: This code was edited or generated using CloudGarden's Jigloo SWT/Swing GUI Builder, which is free for non-commercial use.
ConfigurationFrame() - Constructor for class edu.stanford.rsl.apps.gui.ConfigurationFrame
ConfigurationUpdater - Interface in edu.stanford.rsl.conrad.utils
configure() - Method in class edu.stanford.rsl.apps.gui.blobdetection.AutomaticMarkerDetectionWorker
configure() - Method in class edu.stanford.rsl.apps.gui.blobdetection.MarkerDetectionWorker
configure() - Method in interface edu.stanford.rsl.apps.gui.GUIConfigurable: Configures the object before execution
configure() - Method in class edu.stanford.rsl.apps.gui.pointselector.PointSelectorWorker
configure() - Method in class edu.stanford.rsl.apps.gui.roi.CompareGrayValues
configure() - Method in class edu.stanford.rsl.apps.gui.roi.CopyROI
configure() - Method in class edu.stanford.rsl.apps.gui.roi.DefineHounsfieldScaling
configure() - Method in class edu.stanford.rsl.apps.gui.roi.LearnHounsfieldScaling
configure() - Method in class edu.stanford.rsl.apps.gui.roi.LinewiseFill
configure() - Method in class edu.stanford.rsl.apps.gui.roi.Measure2DBeadMTFAngularRange
configure() - Method in class edu.stanford.rsl.apps.gui.roi.Measure2DBeadMTFMultiDirection
configure() - Method in class edu.stanford.rsl.apps.gui.roi.Measure3DBeadMTF
configure() - Method in class edu.stanford.rsl.apps.gui.roi.MeasureEdgeMTF
configure() - Method in class edu.stanford.rsl.apps.gui.roi.MeasureInlayMTF
configure() - Method in class edu.stanford.rsl.apps.gui.roi.MeasureMTFDroege
configure() - Method in class edu.stanford.rsl.apps.gui.roi.MeasureNoise
configure() - Method in class edu.stanford.rsl.apps.gui.roi.MeasurePatternMTF
configure() - Method in class edu.stanford.rsl.apps.gui.roi.MeasurePDS2BeadAccuracy
configure() - Method in class edu.stanford.rsl.apps.gui.roi.MeasureSlantMTF
configure() - Method in class edu.stanford.rsl.apps.gui.roi.VariableFramerateVisualizer
configure() - Method in class edu.stanford.rsl.apps.gui.roi.ZeroFill
configure() - Method in class edu.stanford.rsl.conrad.cuda.CUDABackProjector
configure() - Method in class edu.stanford.rsl.conrad.cuda.CUDACompensatedBackProjector
configure() - Method in class edu.stanford.rsl.conrad.cuda.CUDAForwardProjector: Start GUI configuration.
configure() - Method in class edu.stanford.rsl.conrad.cuda.CUDAForwardProjectorWithMotion: Start GUI configuration.
configure() - Method in class edu.stanford.rsl.conrad.filtering.AbsoluteValueTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.ApplyHounsfieldScaling
configure() - Method in class edu.stanford.rsl.conrad.filtering.ApplyLambdaWeightingTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.AtractResidual2D
configure() - Method in class edu.stanford.rsl.conrad.filtering.BilateralFilteringTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.CosineWeightingTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.DynamicDensityOptimizationScatterCorrectionTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.ExtremeValueTruncationFilter
configure() - Method in class edu.stanford.rsl.conrad.filtering.FastRadialSymmetryTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.FiducialMarkerDetectionTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.Filtering2DTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.HilbertFilteringTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.HorizontalFlippingTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.HoughFilteringTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.ImageConstantMathFilter
configure() - Method in class edu.stanford.rsl.conrad.filtering.ImageJParallelTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.ImageMathFilter
configure() - Method in class edu.stanford.rsl.conrad.filtering.KinectBasedDetectorSaturationCorrectionTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.LaplaceFilteringTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.LogPoissonNoiseFilteringTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.MeanFilteringTool
configure(int, int) - Method in class edu.stanford.rsl.conrad.filtering.MeanFilteringTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.MeanMarkerBasedProjectionShiftingTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.MeanMarkerBasedProjectionShiftingToolForXCAT
configure() - Method in class edu.stanford.rsl.conrad.filtering.MedianFilteringTool
configure(int, int) - Method in class edu.stanford.rsl.conrad.filtering.MedianFilteringTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.AnisotropicStructureTensorNoiseFilter
configure() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.BilateralFilter3D
configure() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.blocks.AnisotropicStructureTensorBlock
configure() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.blocks.BilateralFilter3DBlock
configure() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.blocks.IdentityTransformBlock
configure() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.blocks.IterativeReconstructionBlock
configure() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.BlockWiseMultiProjectionFilter
configure() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.BlockWiseStructureTensor
configure() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.DiaphragmTrackingTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.IdentityTransformFilter
configure() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.IterativeReconstructionFilter
configure() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.Lambda3DDerivativeFilter
configure() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.ProjectionSortingFilter
configure() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.Triangulation
configure() - Method in class edu.stanford.rsl.conrad.filtering.NonLinearGainCorrectionTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.NumericalDerivativeComputationTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.NumericalLinewiseAntiderivativeFilteringTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.PoissonNoiseFilteringTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.PrimaryModulationScatterCorrectionTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.RampFilteringTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.ArbitraryRampFilter
configure() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.RampFilter
configure() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.SheppLoganRampFilterWithRollOff
configure() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.NooWeightingTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.OSCARWeightingTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.ParkerWeightingTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.SilverWeightingTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.TrajectoryParkerWeightingTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.WesargWeightingTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.Rotate90DegreeLeftTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.ThinPlateSplinesBasedProjectionWarpingTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.ThinPlateSplinesBasedProjectionWarpingToolForXCAT
configure() - Method in class edu.stanford.rsl.conrad.filtering.TruncationCorrectionTool
configure() - Method in class edu.stanford.rsl.conrad.filtering.VolumeAttenuationFactorCorrectionTool
configure() - Method in class edu.stanford.rsl.conrad.geometry.splines.SurfaceBSplineVolumePhantom
configure() - Method in class edu.stanford.rsl.conrad.io.ImagePlusDataSink
configure() - Method in class edu.stanford.rsl.conrad.io.IndividualFilesProjectionDataSink
configure() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLBackProjector
configure() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLForwardProjector: Start GUI configuration.
configure() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLForwardProjectorWithMotion: Start GUI configuration.
configure() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLProjectionPhantomRenderer
configure() - Method in class edu.stanford.rsl.conrad.phantom.AnalyticPhantom
configure() - Method in class edu.stanford.rsl.conrad.phantom.BeadRemovalPhantom
configure() - Method in class edu.stanford.rsl.conrad.phantom.electrondensity.CrisEDPhantomM062
configure() - Method in class edu.stanford.rsl.conrad.phantom.forbild.ForbildPhantom
configure() - Method in class edu.stanford.rsl.conrad.phantom.MovingBallPhantom
configure() - Method in class edu.stanford.rsl.conrad.phantom.renderer.AnalyticPhantomProjector
configure() - Method in class edu.stanford.rsl.conrad.phantom.renderer.CylinderPhantomRenderer
configure() - Method in class edu.stanford.rsl.conrad.phantom.renderer.MetricPhantomRenderer
configure() - Method in class edu.stanford.rsl.conrad.phantom.renderer.ParallelProjectionPhantomRenderer
configure(AnalyticPhantom, AbsorptionModel) - Method in class edu.stanford.rsl.conrad.phantom.renderer.ParallelProjectionPhantomRenderer
configure() - Method in class edu.stanford.rsl.conrad.phantom.renderer.RampProjectionPhantomRenderer
configure() - Method in class edu.stanford.rsl.conrad.phantom.renderer.SliceParallelVolumePhantomRenderer
configure() - Method in class edu.stanford.rsl.conrad.phantom.renderer.StreamingPhantomRenderer
configure() - Method in class edu.stanford.rsl.conrad.phantom.SevenBeadPhantom
configure() - Method in class edu.stanford.rsl.conrad.phantom.WaterCylinderPhantom
configure() - Method in class edu.stanford.rsl.conrad.phantom.workers.AnalyticPhantom3DVolumeRenderer
configure() - Method in class edu.stanford.rsl.conrad.phantom.workers.AnalyticPhantomProjectorWorker
configure(AnalyticPhantom, AbsorptionModel) - Method in class edu.stanford.rsl.conrad.phantom.workers.AnalyticPhantomProjectorWorker
configure() - Method in class edu.stanford.rsl.conrad.phantom.workers.DiracProjectionPhantom
configure() - Method in class edu.stanford.rsl.conrad.phantom.workers.SliceWorker
configure() - Method in class edu.stanford.rsl.conrad.phantom.workers.VolumeOfInterestPhantom
configure() - Method in class edu.stanford.rsl.conrad.phantom.xcat.BreathingScene
configure() - Method in class edu.stanford.rsl.conrad.phantom.xcat.CombinedBreathingHeartScene
configure() - Method in class edu.stanford.rsl.conrad.phantom.xcat.CoronaryScene
configure() - Method in class edu.stanford.rsl.conrad.phantom.xcat.DynamicSquatScene
configure() - Method in class edu.stanford.rsl.conrad.phantom.xcat.HeartScene
configure() - Method in class edu.stanford.rsl.conrad.phantom.xcat.SquatScene
configure() - Method in class edu.stanford.rsl.conrad.phantom.xcat.WholeBodyScene
configure() - Method in class edu.stanford.rsl.conrad.physics.absorption.MonochromaticAbsorptionModel
configure() - Method in class edu.stanford.rsl.conrad.physics.absorption.PolychromaticAbsorptionModel
configure() - Method in class edu.stanford.rsl.conrad.pipeline.DevNullSink
configure() - Method in class edu.stanford.rsl.conrad.pipeline.IndividualImagePipelineFilteringTool
configure() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.IterativeReconstruction
configure() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.ModelBasedIterativeReconstruction
configure() - Method in class edu.stanford.rsl.conrad.reconstruction.IterativeReconstruction
configure() - Method in class edu.stanford.rsl.conrad.reconstruction.ModelBasedIterativeReconstruction
configure() - Method in class edu.stanford.rsl.conrad.reconstruction.RayWeightCorrectingCPUSuperShortScanBackprojector
configure() - Method in class edu.stanford.rsl.conrad.reconstruction.SimpleIterativeReconstruction
configure() - Method in class edu.stanford.rsl.conrad.reconstruction.SubVolumeBackprojector
configure() - Method in class edu.stanford.rsl.conrad.reconstruction.SuperShortScanBackprojection: Deprecated.
configure() - Method in class edu.stanford.rsl.conrad.reconstruction.VOIBasedReconstructionFilter
configure() - Method in class edu.stanford.rsl.tutorial.motionEstimation.OpenCLCompensatedBackProjector
configure() - Method in class edu.stanford.rsl.tutorial.motionEstimation.OpenCLCompensatedBackProjector1DCompressionField
configure() - Method in class edu.stanford.rsl.tutorial.motionEstimation.OpenCLCompensatedBackProjectorTPS
configured() - Method in class edu.stanford.rsl.conrad.io.IndividualFilesProjectionDataSink
ConfigurePipelineFrame - Class in edu.stanford.rsl.apps.gui: This code was edited or generated using CloudGarden's Jigloo SWT/Swing GUI Builder, which is free for non-commercial use.
ConfigurePipelineFrame() - Constructor for class edu.stanford.rsl.apps.gui.ConfigurePipelineFrame
ConnectedComponent3D - Class in edu.stanford.rsl.apps.gui.blobdetection: This class implements multithreaded and linear O(n) 3D particle identification and shape analysis.
ConnectedComponent3D() - Constructor for class edu.stanford.rsl.apps.gui.blobdetection.ConnectedComponent3D
Conrad - Class in edu.stanford.rsl.apps
Conrad() - Constructor for class edu.stanford.rsl.apps.Conrad
CONRAD - Class in edu.stanford.rsl.conrad.utils
CONRAD() - Constructor for class edu.stanford.rsl.conrad.utils.CONRAD
CONRADBibtex - Static variable in class edu.stanford.rsl.conrad.utils.CONRAD
CONRADDefinition - Static variable in class edu.stanford.rsl.conrad.utils.CONRAD
CONRADMedline - Static variable in class edu.stanford.rsl.conrad.utils.CONRAD
ConstantMotionField - Class in edu.stanford.rsl.conrad.geometry.motion
ConstantMotionField() - Constructor for class edu.stanford.rsl.conrad.geometry.motion.ConstantMotionField
Constants - Class in edu.stanford.rsl.conrad.physics
Constants() - Constructor for class edu.stanford.rsl.conrad.physics.Constants
ConstantTimeWarper - Class in edu.stanford.rsl.conrad.geometry.motion.timewarp
ConstantTimeWarper(double) - Constructor for class edu.stanford.rsl.conrad.geometry.motion.timewarp.ConstantTimeWarper
ConstantValueZeroArtifactImage - Class in edu.stanford.rsl.tutorial.truncation: In this class we investigate the paper Yu, H., Yang, J., Jiang, M., & Wang, G.
ConstantValueZeroArtifactImage(int, int, float) - Constructor for class edu.stanford.rsl.tutorial.truncation.ConstantValueZeroArtifactImage
ConstrainedRANSACFittedFunction - Class in edu.stanford.rsl.conrad.fitting: Method for RANSACing with constraints on the parameter bounds.
ConstrainedRANSACFittedFunction(Function) - Constructor for class edu.stanford.rsl.conrad.fitting.ConstrainedRANSACFittedFunction: Uneducational Constructor that initializes the bounds in a redandant way.
contains(Object) - Method in class edu.stanford.rsl.conrad.geometry.shapes.compound.CompoundShape
contains(Object) - Method in class edu.stanford.rsl.conrad.geometry.shapes.compound.LinearOctree
contains(double, double, double) - Method in class edu.stanford.rsl.conrad.reconstruction.voi.CylinderBasedVolumeOfInterest
contains(double, double, double) - Method in class edu.stanford.rsl.conrad.reconstruction.voi.PolygonBasedVolumeOfInterest
contains(double, double, double) - Method in class edu.stanford.rsl.conrad.reconstruction.voi.VolumeOfInterest: Tests whether a given coordinate in world coordinates is within the VOI.
contains(Object) - Method in class edu.stanford.rsl.conrad.rendering.PrioritizableScene
contains(Object) - Method in class edu.stanford.rsl.conrad.rendering.SimpleScene
containsAll(Collection<?>) - Method in class edu.stanford.rsl.conrad.geometry.shapes.compound.CompoundShape
containsAll(Collection<?>) - Method in class edu.stanford.rsl.conrad.geometry.shapes.compound.LinearOctree
containsAll(Collection<?>) - Method in class edu.stanford.rsl.conrad.rendering.PrioritizableScene
containsAll(Collection<?>) - Method in class edu.stanford.rsl.conrad.rendering.SimpleScene
convertInt2Bytes(int) - Method in class edu.stanford.rsl.conrad.io.SEQProjectionSource
convertInt2UnShort(int) - Method in class edu.stanford.rsl.conrad.io.SEQProjectionSource
convertToUnsignedInt(byte[], int) - Method in class edu.stanford.rsl.conrad.io.FileProjectionSource: converts a byte sequence to integer
convertToUnsignedShort(byte[], int) - Method in class edu.stanford.rsl.conrad.io.FileProjectionSource: converts a byte sequence to integer
ConvexHull - Class in edu.stanford.rsl.conrad.geometry: super class for hull constructing algorithms Based on the gift wrapping code from Tim Lambert.
ConvexHull(PointND[]) - Constructor for class edu.stanford.rsl.conrad.geometry.ConvexHull
convolve(float[], int, int) - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor: Performs a convolution operation using the specified kernel.
convolve(double[], double[]) - Static method in class edu.stanford.rsl.conrad.utils.DoubleArrayUtil: Performs a 1-D convolution of the input array with the kernel array.
New array will be only of size
convolve(float[], float[]) - Static method in class edu.stanford.rsl.conrad.utils.FloatArrayUtil: Performs a 1-D convolution of the input array with the kernel array.
New array will be only of size
convolve3x3(int[]) - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor: Does 3x3 convolution.
CoordinateSystem - Class in edu.stanford.rsl.conrad.geometry
CoordinateSystem(Axis...) - Constructor for class edu.stanford.rsl.conrad.geometry.CoordinateSystem
copy(Grid, Grid) - Static method in class edu.stanford.rsl.conrad.data.PointwiseOperators: Copy data of a Grid to another, not including boundaries
copyAsDoubleArray() - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix
copyAsDoubleArray() - Method in class edu.stanford.rsl.conrad.numerics.SimpleVector: Copies the elements of this vector to a double array
copyBits(ImageProcessor, int, int, int) - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor: Copies the image contained in 'ip' to (xloc, yloc) using one of the transfer modes defined in the Blitter interface.
copyFloatArrayToDevice(float[], CUmodule, String) - Static method in class edu.stanford.rsl.conrad.cuda.CUDAUtil
copyInternalElementsTo(SliceWorker) - Method in class edu.stanford.rsl.conrad.phantom.workers.SliceWorker: Method to be called in the clones of Subclasses to copy the information of this class into the new clone.
copyProjectionImage() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.RayDrivenBasedReconstruction
copyProjectionImage() - Method in class edu.stanford.rsl.conrad.reconstruction.RayDrivenBasedReconstruction
copyRedundantData - Class in edu.stanford.rsl.tutorial.fan.dynamicCollimation
copyRedundantData(double, double, double, double, double) - Constructor for class edu.stanford.rsl.tutorial.fan.dynamicCollimation.copyRedundantData
CopyROI - Class in edu.stanford.rsl.apps.gui.roi
CopyROI() - Constructor for class edu.stanford.rsl.apps.gui.roi.CopyROI
CopySlabData - Class in edu.stanford.rsl.conrad.volume3d.operations
CopySlabData() - Constructor for class edu.stanford.rsl.conrad.volume3d.operations.CopySlabData
copyTo(double[][]) - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix: Copy matrix entries to supplied 2x2 double array
copyTo(double[]) - Method in class edu.stanford.rsl.conrad.numerics.SimpleVector: Copies the element of this vector to the double array provided
copyToDeviceMemory(int[]) - Static method in class edu.stanford.rsl.conrad.cuda.CUDAUtil: copies an int array to the device and returns a pointer to the memory.
copyToDeviceMemory(float[]) - Static method in class edu.stanford.rsl.conrad.cuda.CUDAUtil: copies a float array to the device and returns a pointer to the memory.
CoronaryScene - Class in edu.stanford.rsl.conrad.phantom.xcat
CoronaryScene() - Constructor for class edu.stanford.rsl.conrad.phantom.xcat.CoronaryScene
correctMemoryValue(int) - Static method in class edu.stanford.rsl.conrad.cuda.CUDAUtil
correlateArrays(float[], float[]) - Static method in class edu.stanford.rsl.conrad.utils.FloatArrayUtil: computes the correlation coefficient between two arrays after Pearson
correlateDoubleArrays(double[], double[]) - Static method in class edu.stanford.rsl.conrad.utils.DoubleArrayUtil: computes the correlation coefficient between two arrays after Pearson
CorticalBone_mdensity - Static variable in class edu.stanford.rsl.conrad.physics.Constants: Cortical bone (ICRU-44) mass density 1.920E+00 (g/cm3)
corticalBoneEnergies - Static variable in class edu.stanford.rsl.conrad.physics.EnergyDependentCoefficients: Deprecated.

Energies [Mev] at which the coefficients were meassured.
corticalBoneMuEnOverRho - Static variable in class edu.stanford.rsl.conrad.physics.EnergyDependentCoefficients: Deprecated.

mass energy-absorption coefficient (mu_\text{en}/rho) in [cm^2/g]
corticalBoneMuOverRho - Static variable in class edu.stanford.rsl.conrad.physics.EnergyDependentCoefficients: Deprecated.

Photon mass attenuation coefficients (mu/rho) in [cm^2/g]
CosineFilter - Class in edu.stanford.rsl.tutorial.fan
CosineFilter(double, double, double) - Constructor for class edu.stanford.rsl.tutorial.fan.CosineFilter
CosineRampFilter - Class in edu.stanford.rsl.conrad.filtering.rampfilters
CosineRampFilter() - Constructor for class edu.stanford.rsl.conrad.filtering.rampfilters.CosineRampFilter
CosineWeightingTool - Class in edu.stanford.rsl.conrad.filtering: Filtering tool to apply cosine weights.
CosineWeightingTool() - Constructor for class edu.stanford.rsl.conrad.filtering.CosineWeightingTool
covarianceOfArrays(float[], float[]) - Static method in class edu.stanford.rsl.conrad.utils.FloatArrayUtil: computes the covariance between two arrays
covarianceOfDoubleArrays(double[], double[]) - Static method in class edu.stanford.rsl.conrad.utils.DoubleArrayUtil: computes the covariance between two arrays
CPUSuperShortScanBackprojector - Class in edu.stanford.rsl.conrad.reconstruction: Implementation of the backprojector which is required for Noo's super-short-scan reconstruction.
CPUSuperShortScanBackprojector() - Constructor for class edu.stanford.rsl.conrad.reconstruction.CPUSuperShortScanBackprojector
create2DGauss(int, int, double) - Static method in class edu.stanford.rsl.conrad.utils.ImageUtil: Creates a two-dimensional symmetric gaussian filter kernel equal to the Matlab method
create3DChangeOfAxesMatrix(CoordinateSystem, CoordinateSystem) - Static method in class edu.stanford.rsl.conrad.geometry.Rotations: Calculates rotational change of axis matrix from old system to new system using directional cosines.
createArteryTree() - Method in class edu.stanford.rsl.conrad.phantom.xcat.CombinedBreathingHeartScene: Creates the coronary artery tree
createArteryTree(MotionField) - Method in class edu.stanford.rsl.conrad.phantom.xcat.CoronaryScene
createArteryTree(MotionField) - Method in class edu.stanford.rsl.conrad.phantom.xcat.HeartScene
createBasicRotationMatrix(Rotations.BasicAxis, double) - Static method in class edu.stanford.rsl.conrad.geometry.Rotations
createBasicXRotationMatrix(double) - Static method in class edu.stanford.rsl.conrad.geometry.Rotations
createBasicYRotationMatrix(double) - Static method in class edu.stanford.rsl.conrad.geometry.Rotations
createBasicZRotationMatrix(double) - Static method in class edu.stanford.rsl.conrad.geometry.Rotations
createComplexPowerPlot(double[], String) - Static method in class edu.stanford.rsl.conrad.utils.VisualizationUtil
createComplexPowerPlot(double[]) - Static method in class edu.stanford.rsl.conrad.utils.VisualizationUtil
createContext() - Static method in class edu.stanford.rsl.conrad.opencl.OpenCLUtil: Creates the CLContext for the device that is preconfigured in CONRAD.
createCUDACopy(Volume3D) - Method in class edu.stanford.rsl.conrad.cuda.CUDAVolumeTest
createDirectionalWeights(int, int[], float[], float[], int, VolumeOperator.FILTER_TYPE) - Method in class edu.stanford.rsl.conrad.cuda.CUDAVolumeOperator
createDirectionalWeights(int, int[], float[], float[], int, VolumeOperator.FILTER_TYPE) - Method in class edu.stanford.rsl.conrad.volume3d.ParallelVolumeOperator
createDirectionalWeights(int, int[], float[], float[], int, VolumeOperator.FILTER_TYPE) - Method in class edu.stanford.rsl.conrad.volume3d.VolumeOperator: Creates an anisotropic, i.e.
createEmptyVolume(String, int, int, int) - Static method in class edu.stanford.rsl.conrad.phantom.renderer.PhantomRenderer: Creates an empty volume which can be used to render the phantom into.
createExponentialDirectionalHighPassFilter(int, int[], float[], float[], int, float, float, VolumeOperator.FILTER_TYPE) - Method in class edu.stanford.rsl.conrad.cuda.CUDAVolumeOperator
createExponentialDirectionalHighPassFilter(int, int[], float[], float[], int, float, float, VolumeOperator.FILTER_TYPE) - Method in class edu.stanford.rsl.conrad.volume3d.ParallelVolumeOperator
createExponentialDirectionalHighPassFilter(int, int[], float[], float[], int, float, float, VolumeOperator.FILTER_TYPE) - Method in class edu.stanford.rsl.conrad.volume3d.VolumeOperator: Creates an radially symetric anisotropic quadrature filter according to this definition: %preamble{\\usepackage{amsmath}} \\begin{align*} F(\\mathbf{u}) & = \\left \\{ \\begin{array}{ll} \\left(\\frac{\\displaystyle (\\mathbf{u} \\cdot \\hat{\\mathbf{n}}_k)}{\\displaystyle |\\rho|}\\right)^{2A} \\cdot R(\\rho)& \\text{if}\\qquad\\mathbf{u} \\cdot \\hat{\\mathbf{n}}_k >0 \\\\ 0 & \\text{else} \\end{array} \\right .
createGaussLowPassFilter(int, int[], float[], float) - Method in class edu.stanford.rsl.conrad.cuda.CUDAVolumeOperator
createGaussLowPassFilter(int, int[], float[], float) - Method in class edu.stanford.rsl.conrad.volume3d.ParallelVolumeOperator
createGaussLowPassFilter(int, int[], float[], float) - Method in class edu.stanford.rsl.conrad.volume3d.VolumeOperator: Creates an isotropic, i.e.
createHalfComplexPowerPlot(double[], String) - Static method in class edu.stanford.rsl.conrad.utils.VisualizationUtil
createHalfComplexPowerPlot(double[], double[], String) - Static method in class edu.stanford.rsl.conrad.utils.VisualizationUtil
createHeartLesions() - Method in class edu.stanford.rsl.conrad.phantom.xcat.CombinedBreathingHeartScene: Renders cylinder-based regions into the atrium and the left ventricle
createHighPassFilter(int, int[], float[], int, float) - Method in class edu.stanford.rsl.conrad.cuda.CUDAVolumeOperator
createHighPassFilter(int, int[], float[], int, float) - Method in class edu.stanford.rsl.conrad.volume3d.ParallelVolumeOperator
createHighPassFilter(int, int[], float[], int, float) - Method in class edu.stanford.rsl.conrad.volume3d.VolumeOperator: Creates a directional high pass filter $%preamble{\usepackage{amsmath}} $F_{\displaystyle\text{HP}_k}(\mathbf{u}) = 1 - (R_\text{LP}(\rho) \cdot D_k(\mathbf{u}))$$ .
createHomAffineMotionMatrix(SimpleMatrix, SimpleVector) - Static method in class edu.stanford.rsl.conrad.geometry.General
createHomAffineMotionMatrix(SimpleMatrix) - Static method in class edu.stanford.rsl.conrad.geometry.General
createHomAffineMotionMatrix(SimpleVector) - Static method in class edu.stanford.rsl.conrad.geometry.General
createImage() - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor
createInputStream(FileInfo) - Method in class edu.stanford.rsl.conrad.io.FlexibleFileOpener
createKernel(int, int) - Static method in class edu.stanford.rsl.conrad.filtering.MeanFilteringTool
createLesions(MotionField) - Method in class edu.stanford.rsl.conrad.phantom.xcat.HeartScene: Renders lesions into the atrium and the ventricle according to the specified motion field.
createLowPassFilter(int, int[], float[], float) - Method in class edu.stanford.rsl.conrad.cuda.CUDAVolumeOperator
createLowPassFilter(int, int[], float[], float) - Method in class edu.stanford.rsl.conrad.volume3d.ParallelVolumeOperator
createLowPassFilter(int, int[], float[], float) - Method in class edu.stanford.rsl.conrad.volume3d.VolumeOperator: Creates an isotropic low-pass filter, i.e.
createMenuBar() - Method in class edu.stanford.rsl.apps.gui.Experimenter: Create an Edit menu to support cut/copy/paste.
createMenuBar() - Method in class edu.stanford.rsl.apps.gui.ReconstructionPipelineFrame: Create an Edit menu to support cut/copy/paste.
createPhantom() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLProjectionPhantomRenderer
createPhantom() - Method in class edu.stanford.rsl.conrad.phantom.renderer.AnalyticPhantomProjector
createPhantom() - Method in class edu.stanford.rsl.conrad.phantom.renderer.CylinderPhantomRenderer
createPhantom() - Method in class edu.stanford.rsl.conrad.phantom.renderer.PhantomRenderer: Method to start the voxelization of the phantom.
createPhantom() - Method in class edu.stanford.rsl.conrad.phantom.renderer.RampProjectionPhantomRenderer
createPhantom() - Method in class edu.stanford.rsl.conrad.phantom.renderer.SliceParallelVolumePhantomRenderer
createPhysicalObjects() - Method in class edu.stanford.rsl.conrad.phantom.xcat.XCatScene
createPlot(String, double[]) - Static method in class edu.stanford.rsl.conrad.utils.VisualizationUtil
createPlot(String, float[]) - Static method in class edu.stanford.rsl.conrad.utils.VisualizationUtil
createPlot(float[]) - Static method in class edu.stanford.rsl.conrad.utils.VisualizationUtil
createPlot(double[]) - Static method in class edu.stanford.rsl.conrad.utils.VisualizationUtil
createPlot(double[], String, String, String) - Static method in class edu.stanford.rsl.conrad.utils.VisualizationUtil
createPlot(double[], double[], String, String, String) - Static method in class edu.stanford.rsl.conrad.utils.VisualizationUtil
createProcessor(int, int) - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor: Returns a new, blank FloatProcessor with the specified width and height.
createRandomVolume() - Method in class edu.stanford.rsl.conrad.cuda.CUDAVolumeTest
createRotationMatrix(double, double, double) - Static method in class edu.stanford.rsl.conrad.geometry.Rotations: Creates a rotation matrix as the product of RotationMatrixX * RotationMatrixY * RotationMatrixZ
createRotationMatrixAboutAxis(SimpleVector, double) - Static method in class edu.stanford.rsl.conrad.geometry.Rotations
createRotationMatrixAboutAxis(Axis, double) - Static method in class edu.stanford.rsl.conrad.geometry.Rotations: Creates a Rotation Matrix about an arbitrary axis.
createScatterPlot(double[], double[], Function) - Static method in class edu.stanford.rsl.conrad.utils.VisualizationUtil
createScatterPlot(String, double[], double[], Function) - Static method in class edu.stanford.rsl.conrad.utils.VisualizationUtil
createScatterPlot(String, double[], double[]) - Static method in class edu.stanford.rsl.conrad.utils.VisualizationUtil: Creates a scatter plot for two given double arrays with the given title.
createSplinePlot(BSpline) - Static method in class edu.stanford.rsl.conrad.utils.VisualizationUtil
createTestSpline() - Static method in class edu.stanford.rsl.conrad.geometry.splines.SplineTests
createTestSurfaceSpline() - Static method in class edu.stanford.rsl.conrad.geometry.splines.SplineTests
createTrianglesFromPlanarPointSet(ArrayList<PointND>) - Static method in class edu.stanford.rsl.conrad.geometry.General: Creates a triangle mesh for a planar set of points.
createTrianglesFromPlanarPointSet(ArrayList<PointND>, String, BufferedWriter) - Static method in class edu.stanford.rsl.conrad.geometry.General: Creates a triangle mesh for a planar set of points.
createVolume(int[], float[], int) - Method in class edu.stanford.rsl.conrad.cuda.CUDAVolumeOperator
createVolume(ImagePlus, int, int, boolean) - Method in class edu.stanford.rsl.conrad.cuda.CUDAVolumeOperator
createVolume(int[], float[], int) - Method in class edu.stanford.rsl.conrad.volume3d.VolumeOperator: Creates a new empty volume according to the parameters.
createVolume(ImagePlus, int, int, boolean) - Method in class edu.stanford.rsl.conrad.volume3d.VolumeOperator: Creates a Volume3D Object from an ImagePlus.
CrisEDPhantomGUI - Class in edu.stanford.rsl.conrad.phantom.electrondensity: Temporary GUI
CrisEDPhantomGUI(CrisEDPhantomM062) - Constructor for class edu.stanford.rsl.conrad.phantom.electrondensity.CrisEDPhantomGUI
CrisEDPhantomM062 - Class in edu.stanford.rsl.conrad.phantom.electrondensity: This class models CRIS's Electron Density Phantom Model 062 .
This phantom enables precise correlation of CT data in hounsfield units to electron density and includes eight different tissue references.
Model 062 consists of a small cylindrical disk (Inner) nested within a large spherical disk (Outer).
Phantom can be configured to simulate head or abdomen, by positioning tissue equivalent samples at 17 different locations within the scan field.
CrisEDPhantomM062() - Constructor for class edu.stanford.rsl.conrad.phantom.electrondensity.CrisEDPhantomM062
crop() - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor
crossProduct(SimpleVector, SimpleVector) - Static method in class edu.stanford.rsl.conrad.geometry.General
CsI_mdensity - Static variable in class edu.stanford.rsl.conrad.physics.Constants: CsI mass density 4.51 (g/cm3)
CsIEnergies - Static variable in class edu.stanford.rsl.conrad.physics.EnergyDependentCoefficients: Deprecated.

Energies [Mev] at which the coefficients were measured.
cSignum(double[]) - Static method in class edu.stanford.rsl.conrad.utils.FFTUtil: Computes the signum for the given complex array.
CsIMuEnOverRho - Static variable in class edu.stanford.rsl.conrad.physics.EnergyDependentCoefficients: Deprecated.

mass energy-absorption coefficient (mu_\text{en}/rho) in [cm^2/g]
CsIMuOverRho - Static variable in class edu.stanford.rsl.conrad.physics.EnergyDependentCoefficients: Deprecated.

Photon mass attenuation coefficients (mu/rho) in [cm^2/g]
CUDAAnisotropicStructureTensorNoiseFilter - Class in edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic: MultiProjectionFilter which implements an anisotropic structure tensor noise filter on CUDA.
CUDAAnisotropicStructureTensorNoiseFilter() - Constructor for class edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.CUDAAnisotropicStructureTensorNoiseFilter
CUDABackProjector - Class in edu.stanford.rsl.conrad.cuda
CUDABackProjector() - Constructor for class edu.stanford.rsl.conrad.cuda.CUDABackProjector
CUDABSpline - Class in edu.stanford.rsl.conrad.cuda.splines: Wrapper class to create a BSpline object in the CUDAMemory
CUDABSpline(BSpline) - Constructor for class edu.stanford.rsl.conrad.cuda.splines.CUDABSpline
CUDACompensatedBackProjector - Class in edu.stanford.rsl.conrad.cuda: This is the existing CUDABackProjector with added motion compensation.
CUDACompensatedBackProjector() - Constructor for class edu.stanford.rsl.conrad.cuda.CUDACompensatedBackProjector
CUDAFFTAnisotropicStructureTensorNoiseFilter - Class in edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic: MultiProjectionFilter which implements an anisotropic structure tensor noise filter.
CUDAFFTAnisotropicStructureTensorNoiseFilter() - Constructor for class edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.CUDAFFTAnisotropicStructureTensorNoiseFilter
CUDAFFTVolumeHandle - Class in edu.stanford.rsl.conrad.cuda
CUDAFFTVolumeHandle(VolumeOperator) - Constructor for class edu.stanford.rsl.conrad.cuda.CUDAFFTVolumeHandle
CUDAFFTVolumeHandle.CUFFTResult - Enum in edu.stanford.rsl.conrad.cuda
CUDAForwardProjector - Class in edu.stanford.rsl.conrad.cuda: Forward projection expects input of a volumetric phantom scaled to mass density.
CUDAForwardProjector() - Constructor for class edu.stanford.rsl.conrad.cuda.CUDAForwardProjector
CUDAForwardProjectorWithMotion - Class in edu.stanford.rsl.conrad.cuda: Forward projection expects input of a volumetric phantom scaled to mass density.
CUDAForwardProjectorWithMotion() - Constructor for class edu.stanford.rsl.conrad.cuda.CUDAForwardProjectorWithMotion
cudaRun() - Method in class edu.stanford.rsl.conrad.cuda.CUDABackProjector
cudaRun() - Method in class edu.stanford.rsl.conrad.cuda.CUDACompensatedBackProjector
CUDAUtil - Class in edu.stanford.rsl.conrad.cuda
CUDAUtil() - Constructor for class edu.stanford.rsl.conrad.cuda.CUDAUtil
CUDAVolume3D - Class in edu.stanford.rsl.conrad.cuda: CUDAVolume3D models a Volume3D in the CUDA memory.
CUDAVolume3D(int[], float[], int) - Constructor for class edu.stanford.rsl.conrad.cuda.CUDAVolume3D
CUDAVolume3D(ImagePlus, int, int, boolean) - Constructor for class edu.stanford.rsl.conrad.cuda.CUDAVolume3D
CUDAVolumeOperator - Class in edu.stanford.rsl.conrad.cuda: Class to implement all functions of VolumeOperator on CUDA hardware.
CUDAVolumeOperator() - Constructor for class edu.stanford.rsl.conrad.cuda.CUDAVolumeOperator
CUDAVolumeTest - Class in edu.stanford.rsl.conrad.cuda
CUDAVolumeTest() - Constructor for class edu.stanford.rsl.conrad.cuda.CUDAVolumeTest
currentBeadNo - Static variable in class edu.stanford.rsl.conrad.geometry.motion.WeightBearingBeadPositionBuilder
CurveTests - Class in edu.stanford.rsl.conrad.geometry.test
CurveTests() - Constructor for class edu.stanford.rsl.conrad.geometry.test.CurveTests
Cylinder - Class in edu.stanford.rsl.conrad.geometry.shapes.simple: Creates a Cylinder.
Cylinder() - Constructor for class edu.stanford.rsl.conrad.geometry.shapes.simple.Cylinder
Cylinder(double, double, double) - Constructor for class edu.stanford.rsl.conrad.geometry.shapes.simple.Cylinder: Creates a new cylinder around (0,0,0) with radii dx, dy, and height dz.
CylinderBasedVolumeOfInterest - Class in edu.stanford.rsl.conrad.reconstruction.voi: Describes a VOI consisting of a cylinder with one cone on top and one cone on the bottom.
CylinderBasedVolumeOfInterest() - Constructor for class edu.stanford.rsl.conrad.reconstruction.voi.CylinderBasedVolumeOfInterest
CylinderPhantomRenderer - Class in edu.stanford.rsl.conrad.phantom.renderer: Phantom of a homogeneous cylinder.
CylinderPhantomRenderer() - Constructor for class edu.stanford.rsl.conrad.phantom.renderer.CylinderPhantomRenderer
CylinderVolumeMask - Class in edu.stanford.rsl.tutorial.motionEstimation: This class applies a cylinder mask to the reconstructed volume Grid in order to get rid of errors outside the VOI
CylinderVolumeMask(int, int, int, int, double) - Constructor for class edu.stanford.rsl.tutorial.motionEstimation.CylinderVolumeMask

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