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I

I_2 - Static variable in class edu.stanford.rsl.conrad.numerics.SimpleMatrix
 
I_3 - Static variable in class edu.stanford.rsl.conrad.numerics.SimpleMatrix
 
I_4 - Static variable in class edu.stanford.rsl.conrad.numerics.SimpleMatrix
 
IdentifierExpression - Class in edu.stanford.rsl.conrad.numerics.mathexpressions
A wrapper class for identifiers
IdentifierExpression(String) - Constructor for class edu.stanford.rsl.conrad.numerics.mathexpressions.IdentifierExpression
 
identity() - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix
Sets the matrix to the identity matrix, i.e.
IdentityFunction - Class in edu.stanford.rsl.conrad.fitting
 
IdentityFunction() - Constructor for class edu.stanford.rsl.conrad.fitting.IdentityFunction
 
IdentityTimeWarper - Class in edu.stanford.rsl.conrad.geometry.motion.timewarp
Models a non periodic time constraint.
IdentityTimeWarper() - Constructor for class edu.stanford.rsl.conrad.geometry.motion.timewarp.IdentityTimeWarper
 
IdentityTransformBlock - Class in edu.stanford.rsl.conrad.filtering.multiprojection.blocks
 
IdentityTransformBlock() - Constructor for class edu.stanford.rsl.conrad.filtering.multiprojection.blocks.IdentityTransformBlock
 
IdentityTransformFilter - Class in edu.stanford.rsl.conrad.filtering.multiprojection
Class to test the BlockWiseMultiProjectionFilter.
IdentityTransformFilter() - Constructor for class edu.stanford.rsl.conrad.filtering.multiprojection.IdentityTransformFilter
 
iDivUp(int, int) - Static method in class edu.stanford.rsl.conrad.cuda.CUDAUtil
Integral division, rounding the result to the next highest integer.
iDivUp(long, long) - Static method in class edu.stanford.rsl.conrad.opencl.OpenCLUtil
Integral division, rounding the result to the next highest integer.
iDivUp(int, int) - Static method in class edu.stanford.rsl.conrad.opencl.OpenCLUtil
Integral division, rounding the result to the next highest integer.
IIRFilter() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.IRRFilter
 
imag(Volume3D) - Method in class edu.stanford.rsl.conrad.cuda.CUDAVolumeOperator
 
imag(Volume3D) - Method in class edu.stanford.rsl.conrad.volume3d.ParallelVolumeOperator
 
imag(Volume3D) - Method in class edu.stanford.rsl.conrad.volume3d.VolumeOperator
Maps a complex volume onto its imaginary part.
imageClosed(ImagePlus) - Method in class edu.stanford.rsl.apps.gui.pointselector.PointSelectorWorker
 
ImageConstantMathFilter - Class in edu.stanford.rsl.conrad.filtering
 
ImageConstantMathFilter() - Constructor for class edu.stanford.rsl.conrad.filtering.ImageConstantMathFilter
 
ImageDomainSignal(double[][]) - Method in class edu.stanford.rsl.conrad.phantom.SheppLogan3D
Given a list of position vectors, i.e.
ImageDomainSignal(double, double, double) - Method in class edu.stanford.rsl.conrad.phantom.SheppLogan3D
returning real value of the image intensity at (x,y,z).
ImageFilteringTool - Class in edu.stanford.rsl.conrad.filtering
Abstract class to describe the blue print of an ImageFilteringTool.
ImageFilteringTool() - Constructor for class edu.stanford.rsl.conrad.filtering.ImageFilteringTool
 
ImageJParallelTool - Class in edu.stanford.rsl.conrad.filtering
Filtering tool to apply an arbitrary ImageJ operation in parallel.
ImageJParallelTool() - Constructor for class edu.stanford.rsl.conrad.filtering.ImageJParallelTool
 
ImageMathFilter - Class in edu.stanford.rsl.conrad.filtering
 
ImageMathFilter() - Constructor for class edu.stanford.rsl.conrad.filtering.ImageMathFilter
 
ImageMetric - Class in edu.stanford.rsl.conrad.metric
 
ImageMetric() - Constructor for class edu.stanford.rsl.conrad.metric.ImageMetric
 
imageName - Variable in class edu.stanford.rsl.conrad.io.Nrrd_Reader
 
imageOpened(ImagePlus) - Method in class edu.stanford.rsl.apps.gui.pointselector.PointSelectorWorker
 
imagePath - Variable in class edu.stanford.rsl.conrad.io.Nrrd_Reader
 
ImagePlusDataSink - Class in edu.stanford.rsl.conrad.io
Class to model an ImagePlus projection source, i.e.
ImagePlusDataSink() - Constructor for class edu.stanford.rsl.conrad.io.ImagePlusDataSink
 
ImagePlusProjectionDataSource - Class in edu.stanford.rsl.conrad.io
 
ImagePlusProjectionDataSource() - Constructor for class edu.stanford.rsl.conrad.io.ImagePlusProjectionDataSource
 
ImagePlusVolumeRenderer - Class in edu.stanford.rsl.conrad.cuda
 
ImagePlusVolumeRenderer(byte[], int, int, int, boolean) - Constructor for class edu.stanford.rsl.conrad.cuda.ImagePlusVolumeRenderer
 
ImagePlusVolumeRenderer(ImagePlus) - Constructor for class edu.stanford.rsl.conrad.cuda.ImagePlusVolumeRenderer
 
ImageProcessingBlock - Class in edu.stanford.rsl.conrad.filtering.multiprojection.blocks
 
ImageProcessingBlock() - Constructor for class edu.stanford.rsl.conrad.filtering.multiprojection.blocks.ImageProcessingBlock
 
ImageProcessorBuffer - Class in edu.stanford.rsl.conrad.utils
Class to buffer ImageProcessors which were processed in a parallel manner.
ImageProcessorBuffer() - Constructor for class edu.stanford.rsl.conrad.utils.ImageProcessorBuffer
creates a new ImageProcessorBuffer object.
imageUpdated(ImagePlus) - Method in class edu.stanford.rsl.apps.gui.pointselector.PointSelectorWorker
 
ImageUtil - Class in edu.stanford.rsl.conrad.utils
 
ImageUtil() - Constructor for class edu.stanford.rsl.conrad.utils.ImageUtil
 
imaginaryFromFHT(FHT) - Static method in class edu.stanford.rsl.conrad.utils.FHTUtil
Computes the imaginary values of an FFT given the values of an FHT.
imgType(int) - Static method in class edu.stanford.rsl.conrad.io.Nrrd_Writer
 
importData(TransferHandler.TransferSupport) - Method in class edu.stanford.rsl.apps.gui.FileTextFieldTransferHandler
 
importFromXML() - Static method in class edu.stanford.rsl.conrad.utils.XmlUtils
 
importFromXML(String) - Static method in class edu.stanford.rsl.conrad.utils.XmlUtils
 
in_dim - Variable in class edu.stanford.rsl.conrad.volume3d.Volume3D
 
INCOHERENT_SCATTER - Static variable in class edu.stanford.rsl.conrad.physics.absorption.AbsorptionModel
 
indexToPhysical(double) - Method in class edu.stanford.rsl.conrad.data.Grid1D
 
indexToPhysical(double, double) - Method in class edu.stanford.rsl.conrad.data.Grid2D
 
indexToPhysical(double, double, double) - Method in class edu.stanford.rsl.conrad.data.Grid3D
 
IndividualFilesProjectionDataSink - Class in edu.stanford.rsl.conrad.io
Class to model a directory as projection data sink.
IndividualFilesProjectionDataSink() - Constructor for class edu.stanford.rsl.conrad.io.IndividualFilesProjectionDataSink
 
IndividualImageFilteringTool - Class in edu.stanford.rsl.conrad.filtering
 
IndividualImageFilteringTool() - Constructor for class edu.stanford.rsl.conrad.filtering.IndividualImageFilteringTool
 
IndividualImagePipelineFilteringTool - Class in edu.stanford.rsl.conrad.pipeline
Class to describe the thread which runs in a parallel image pipeline.
IndividualImagePipelineFilteringTool() - Constructor for class edu.stanford.rsl.conrad.pipeline.IndividualImagePipelineFilteringTool
 
init(GLAutoDrawable) - Method in class edu.stanford.rsl.conrad.cuda.ImagePlusVolumeRenderer
 
init(GLAutoDrawable) - Method in class edu.stanford.rsl.conrad.cuda.JCudaDriverTextureSample
Implementation of GLEventListener: Called to initialize the GLAutoDrawable.
init(PointND, SimpleVector) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.StraightLine
 
init(PointND, PointND) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.StraightLine
 
init(int, int) - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix
Initialize zero matrix
init(SimpleMatrix) - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix
Initialize matrix with data from supplied matrix
init(double[][]) - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix
Initialize matrix with data from 2x2 double array
init(String) - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix
Initialize matrix with data string of the form []
init(int) - Method in class edu.stanford.rsl.conrad.numerics.SimpleVector
Initialize vector to [0,0,...,0] and length len.
init(SimpleVector) - Method in class edu.stanford.rsl.conrad.numerics.SimpleVector
Initialize vector with otherVec
init(double...) - Method in class edu.stanford.rsl.conrad.numerics.SimpleVector
Initialize vector with a comma-separated list of double array
init(String) - Method in class edu.stanford.rsl.conrad.numerics.SimpleVector
Initialize vector with string equivalent
init(GLAutoDrawable) - Method in class edu.stanford.rsl.conrad.opencl.GLCLDemo.GLCLInteroperabilityDemo
 
init(Component) - Method in class edu.stanford.rsl.conrad.opencl.GLCLDemo.UserSceneInteraction
 
init(int, int) - Method in class edu.stanford.rsl.conrad.opencl.OpenCLAppendBufferRenderer
 
init(int, int) - Method in class edu.stanford.rsl.conrad.opencl.OpenCLRenderer
 
init(int, int) - Method in class edu.stanford.rsl.conrad.opencl.OpenCLYBufferRenderer
 
init(GLAutoDrawable) - Method in class edu.stanford.rsl.conrad.opencl.rendering.OpenCLTextureRendering
Implementation of GLEventListener: Called to initialize the GLAutoDrawable.
init(double, double, double) - Method in class edu.stanford.rsl.conrad.phantom.electrondensity.QuadricDisk
 
init() - Method in class edu.stanford.rsl.conrad.phantom.xcat.CoronaryScene
 
init() - Method in class edu.stanford.rsl.conrad.phantom.xcat.HeartScene
 
init1DFFT(int) - Static method in class edu.stanford.rsl.conrad.utils.FFTUtil
 
initAppendBufferRender(CLContext) - Static method in class edu.stanford.rsl.conrad.opencl.OpenCLUtil
 
initConfig() - Static method in class edu.stanford.rsl.conrad.utils.Configuration
 
initCUDA() - Method in class edu.stanford.rsl.conrad.cuda.CUDAVolumeOperator
 
initFromGL(double[], double[], int[]) - Method in class edu.stanford.rsl.conrad.geometry.Projection
Gets all projection parameters from a given OpenGL projection matrix.
initFromP(SimpleMatrix) - Method in class edu.stanford.rsl.conrad.geometry.Projection
Define the projection using a 3x4 projection matrix.
initFromSKRT(double, SimpleMatrix, SimpleMatrix, SimpleVector) - Method in class edu.stanford.rsl.conrad.geometry.Projection
Set the projection's intrinsic and extrinsic parameters all at once.
initGUI() - Method in class edu.stanford.rsl.apps.gui.RegistryEditor
 
INITIAL_BEADS_LOCATION_FILE - Static variable in class edu.stanford.rsl.conrad.utils.RegKeys
Entry to the file which contains the initial beads position in projection [u, v].
This is for the weight-bearing project.
The value is a String indicating the path and filename of the text file.
initialize() - Method in class edu.stanford.rsl.conrad.data.Grid1D
 
initialize(Grid3D) - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.LeastSquaresCG
 
initialize(Grid3D) - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.PenalizedLeastSquareART
 
Initialize() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.RayDrivenBasedReconstruction
 
Initialize() - Method in class edu.stanford.rsl.conrad.reconstruction.RayDrivenBasedReconstruction
 
InitializeGaussian - Class in edu.stanford.rsl.conrad.volume3d.operations
 
InitializeGaussian() - Constructor for class edu.stanford.rsl.conrad.volume3d.operations.InitializeGaussian
 
InitializeHighPass - Class in edu.stanford.rsl.conrad.volume3d.operations
 
InitializeHighPass() - Constructor for class edu.stanford.rsl.conrad.volume3d.operations.InitializeHighPass
 
InitializeLowPass - Class in edu.stanford.rsl.conrad.volume3d.operations
 
InitializeLowPass() - Constructor for class edu.stanford.rsl.conrad.volume3d.operations.InitializeLowPass
 
InitializeProjectionImage() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.RayDrivenBasedReconstruction
 
InitializeProjectionImage() - Method in class edu.stanford.rsl.conrad.reconstruction.RayDrivenBasedReconstruction
 
InitializeProjectionViews() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.ModelBasedIterativeReconstruction
 
initializeProjectionVolume() - Method in class edu.stanford.rsl.conrad.reconstruction.MotionCompensatedSubVolumeBackprojector
 
initializeProjectionVolume() - Method in class edu.stanford.rsl.conrad.reconstruction.ReconstructionFilter
creates an empty projection volume.
initializeProjectionVolume() - Method in class edu.stanford.rsl.conrad.reconstruction.SubVolumeBackprojector
 
InitializeSquaredCosine - Class in edu.stanford.rsl.conrad.volume3d.operations
 
InitializeSquaredCosine() - Constructor for class edu.stanford.rsl.conrad.volume3d.operations.InitializeSquaredCosine
 
InitializeSquaredCosineR - Class in edu.stanford.rsl.conrad.volume3d.operations
 
InitializeSquaredCosineR() - Constructor for class edu.stanford.rsl.conrad.volume3d.operations.InitializeSquaredCosineR
 
initializeTest() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.ModelBasedIterativeReconstruction
 
initializeTest() - Method in class edu.stanford.rsl.conrad.reconstruction.ModelBasedIterativeReconstruction
 
InitializeVolumeImage() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.ModelBasedIterativeReconstruction
 
InitialOptimization - Class in edu.stanford.rsl.tutorial.motionEstimation
This class implements an initial optimization of the motion field generated by the diaphragm tracking and triangulation filters.
InitialOptimization(ProjectionLoader) - Constructor for class edu.stanford.rsl.tutorial.motionEstimation.InitialOptimization
Constructor.
initProgram(CLContext) - Static method in class edu.stanford.rsl.conrad.opencl.OpenCLUtil
 
initRender(CLContext) - Static method in class edu.stanford.rsl.conrad.opencl.OpenCLUtil
 
initSimpleObjectEvaluator(CLContext) - Static method in class edu.stanford.rsl.conrad.opencl.OpenCLUtil
 
initStream(String) - Method in class edu.stanford.rsl.conrad.io.DennerleinProjectionSource
 
initStream(String) - Method in class edu.stanford.rsl.conrad.io.DicomProjectionSource
 
initStream(InputStream) - Method in class edu.stanford.rsl.conrad.io.DicomProjectionSource
 
initStream(String) - Method in class edu.stanford.rsl.conrad.io.ImagePlusProjectionDataSource
 
initStream(String) - Method in class edu.stanford.rsl.conrad.io.NRRDProjectionSource
 
initStream(String) - Method in class edu.stanford.rsl.conrad.io.SEQProjectionSource
 
initStream(String) - Method in class edu.stanford.rsl.conrad.io.TiffProjectionSource
 
initStream(InputStream) - Method in class edu.stanford.rsl.conrad.io.TiffProjectionSource
 
initStream(String) - Method in class edu.stanford.rsl.conrad.io.ZipProjectionSource
 
initStream(String) - Method in class edu.stanford.rsl.conrad.phantom.renderer.PhantomRenderer
 
initStream(String) - Method in class edu.stanford.rsl.conrad.pipeline.ParallelImageFilterSink
 
initStream(String) - Method in interface edu.stanford.rsl.conrad.pipeline.ProjectionSource
Initializes the the ProjectionSource.
initToExampleCamera() - Method in class edu.stanford.rsl.conrad.geometry.Projection
Creates a exemplary perspective projection.
initTrajectory(CircularTrajectory) - Static method in class edu.stanford.rsl.conrad.reconstruction.test.IterativeReconstructionTestA
 
initTrajectory(CircularTrajectory) - Static method in class edu.stanford.rsl.conrad.reconstruction.test.IterativeReconstructionTestB
 
initTriangleAppendBufferRender(CLContext) - Static method in class edu.stanford.rsl.conrad.opencl.OpenCLUtil
 
initYXDraw(CLContext) - Static method in class edu.stanford.rsl.conrad.opencl.OpenCLUtil
 
INNER_RING - Static variable in class edu.stanford.rsl.conrad.phantom.electrondensity.CrisEDPhantomM062
 
INPUT_QUEUE_DELAY - Static variable in class edu.stanford.rsl.conrad.utils.CONRAD
 
Insert - Class in edu.stanford.rsl.conrad.phantom.electrondensity
Models the insert of an ED Phantom.
Insert(Material, int) - Constructor for class edu.stanford.rsl.conrad.phantom.electrondensity.Insert
 
insertUpdate(DocumentEvent) - Method in class edu.stanford.rsl.apps.gui.blobdetection.MarkerDetection
 
instantiateScene() - Static method in class edu.stanford.rsl.conrad.phantom.xcat.XCatMetricPhantomCreator
 
int16Types - Variable in class edu.stanford.rsl.conrad.io.Nrrd_Reader
 
int16Types - Variable in class edu.stanford.rsl.conrad.io.NRRDProjectionSource
 
int32Types - Variable in class edu.stanford.rsl.conrad.io.Nrrd_Reader
 
int32Types - Variable in class edu.stanford.rsl.conrad.io.NRRDProjectionSource
 
Integ(double[], String, double[], double, double) - Static method in class edu.stanford.rsl.conrad.physics.XRaySpectrum
 
interact(GL2) - Method in class edu.stanford.rsl.conrad.opencl.GLCLDemo.UserSceneInteraction
 
InteractiveConfigFileReader - Class in edu.stanford.rsl.conrad.io
 
InteractiveConfigFileReader() - Constructor for class edu.stanford.rsl.conrad.io.InteractiveConfigFileReader
 
interpolate(PointND) - Method in class edu.stanford.rsl.tutorial.motionEstimation.RadialBasisFunctionInterpolation
 
interpolate(PointND) - Method in class edu.stanford.rsl.tutorial.motionEstimation.ThinPlateSplineInterpolation
Interpolation function
interpolateLinear(Grid1D, double) - Static method in class edu.stanford.rsl.conrad.data.InterpolationOperators
Linear interpolation of a 1D Grid
interpolateLinear(Grid2D, double, double) - Static method in class edu.stanford.rsl.conrad.data.InterpolationOperators
Linear interpolation of a 2D Grid
interpolateLinear(Grid3D, double, double, double) - Static method in class edu.stanford.rsl.conrad.data.InterpolationOperators
Linear interpolation of a 3D Grid
interpolateValue(Number) - Method in class edu.stanford.rsl.conrad.utils.interpolation.NumberInterpolatingTreeMap
Returns the intepolated value of key
InterpolateYValue(double) - Method in class edu.stanford.rsl.conrad.utils.interpolation.Interpolator
 
InterpolateYValue(double) - Method in class edu.stanford.rsl.conrad.utils.interpolation.LinearInterpolator
 
InterpolateYValue(double) - Method in class edu.stanford.rsl.conrad.utils.interpolation.LogLinearInterpolator
 
InterpolateYValue(double) - Method in class edu.stanford.rsl.conrad.utils.interpolation.LogLogInterpolator
 
InterpolationOperators - Class in edu.stanford.rsl.conrad.data
The collection of all interpolation operators for Grids.
InterpolationOperators() - Constructor for class edu.stanford.rsl.conrad.data.InterpolationOperators
 
Interpolator - Class in edu.stanford.rsl.conrad.utils.interpolation
This is a abstract class for interpolators.
Interpolator() - Constructor for class edu.stanford.rsl.conrad.utils.interpolation.Interpolator
 
intersect(AbstractCurve) - Method in class edu.stanford.rsl.conrad.geometry.AbstractShape
Returns the intersection points between the curve and the shape.
intersect(AbstractCurve) - Method in class edu.stanford.rsl.conrad.geometry.shapes.compound.CompoundShape
 
intersect(AbstractCurve) - Method in class edu.stanford.rsl.conrad.geometry.shapes.compound.LinearOctree
 
intersect(AbstractCurve) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Box
 
intersect(StraightLine) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Edge
 
intersect(AbstractCurve) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Plane3D
 
intersect(StraightLine) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Plane3D
 
intersect(AbstractCurve) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.SimpleSurface
 
intersect(AbstractCurve) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.StraightLine
 
intersect(StraightLine) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.StraightLine
 
intersect(StraightLine, double) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.StraightLine
 
intersect(StraightLine) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Triangle
 
intersect(AbstractCurve) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Triangle
 
intersect(AbstractCurve) - Method in class edu.stanford.rsl.conrad.geometry.splines.BSpline
 
intersect(AbstractCurve) - Method in class edu.stanford.rsl.conrad.geometry.splines.SurfaceBSpline
 
intersect(AbstractCurve) - Method in class edu.stanford.rsl.conrad.geometry.splines.TimeVariantSurfaceBSpline
 
intersect(AbstractCurve) - Method in class edu.stanford.rsl.conrad.physics.PhysicalObject
 
intersect2D(StraightLine) - Method in class edu.stanford.rsl.conrad.geometry.ConvexHull
Intersects lines between subsequent hull points.
intersect3D(StraightLine) - Method in class edu.stanford.rsl.conrad.geometry.ConvexHull
 
intersectDeCasteljau(StraightLine) - Method in class edu.stanford.rsl.conrad.geometry.splines.SurfaceBSpline
 
intersectPlaneTest() - Method in class edu.stanford.rsl.conrad.geometry.test.SurfaceTests
 
intersectRayWithCuboid(StraightLine, PointND, PointND) - Static method in class edu.stanford.rsl.conrad.geometry.General
 
intersectRayWithCuboid(SimpleVector, SimpleVector, SimpleVector, SimpleVector, double[]) - Static method in class edu.stanford.rsl.conrad.geometry.General
Computes the two intersections of a ray with a cuboid, called entry and exit point where the ray is specified by the given line origin and ray direction.
intersectRayWithCuboid(SimpleVector, SimpleVector, SimpleVector, double[], SimpleVector, SimpleVector) - Method in class edu.stanford.rsl.conrad.geometry.Projection
Computes the two intersections of a ray with a cuboid, called entry and exit point where the ray is defined by this projection and the given pixel.
intersectTest() - Method in class edu.stanford.rsl.conrad.geometry.test.CurveTests
 
inverse() - Method in class edu.stanford.rsl.conrad.geometry.transforms.AffineTransform
 
inverse() - Method in class edu.stanford.rsl.conrad.geometry.transforms.ComboTransform
Inverts the transformers and order of transformation
inverse() - Method in class edu.stanford.rsl.conrad.geometry.transforms.ScaleRotate
 
inverse() - Method in class edu.stanford.rsl.conrad.geometry.transforms.Transform
 
inverse() - Method in class edu.stanford.rsl.conrad.geometry.transforms.Translation
 
inverse(boolean) - Method in class edu.stanford.rsl.conrad.numerics.DecompositionSVD
Return the Moore-Penrose (generalized) inverse Slightly modified version of Kim van der Linde's code
inverse(SimpleMatrix.InversionType) - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix
Inverts the given matrix using the specified inversion method.
INVERSE_SPEEDUP - Static variable in class edu.stanford.rsl.conrad.utils.CONRAD
 
inverseTransform(Pointer, int[]) - Method in class edu.stanford.rsl.conrad.cuda.CUDAFFTVolumeHandle
Performs an inverse 3-D FFT on the CUDA device memory pointed to by deviceX.
inverseTransform(Volume3D) - Method in class edu.stanford.rsl.conrad.cuda.CUDAFFTVolumeHandle
 
inverseTransform(Volume3D) - Method in class edu.stanford.rsl.conrad.volume3d.FFTVolumeHandle
Performs a normalized inverse Fast Fourier Transform of the Volume
inverseTransform(Volume3D) - Method in class edu.stanford.rsl.conrad.volume3d.JTransformsFFTVolumeHandle
 
invert() - Method in class edu.stanford.rsl.conrad.geometry.transforms.Quaternion
 
invert() - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor
 
invertRampFilter(double[], double) - Static method in class edu.stanford.rsl.conrad.utils.FFTUtil
Estimates an inverse of a Ramp Filter.
IRRFilter - Class in edu.stanford.rsl.conrad.filtering.rampfilters
 
IRRFilter() - Constructor for class edu.stanford.rsl.conrad.filtering.rampfilters.IRRFilter
 
isBounded() - Method in class edu.stanford.rsl.conrad.geometry.AbstractShape
Returns true if the shape is of limited space
isBounded() - Method in class edu.stanford.rsl.conrad.geometry.shapes.ArbitrarySurface
 
isBounded() - Method in class edu.stanford.rsl.conrad.geometry.shapes.compound.CompoundShape
 
isBounded() - Method in class edu.stanford.rsl.conrad.geometry.shapes.compound.LinearOctree
 
isBounded() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Box
 
isBounded() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Cone
 
isBounded() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Cylinder
 
isBounded() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Edge
 
isBounded() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Ellipsoid
 
isBounded() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Plane3D
 
isBounded() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.QuadricSurface
 
isBounded() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Sphere
 
isBounded() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.StraightLine
 
isBounded() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Triangle
 
isBounded() - Method in class edu.stanford.rsl.conrad.geometry.splines.BSpline
 
isBounded() - Method in class edu.stanford.rsl.conrad.geometry.splines.SurfaceBSpline
 
isBounded() - Method in class edu.stanford.rsl.conrad.geometry.splines.TimeVariantSurfaceBSpline
 
isbUniformAlpha() - Method in class edu.stanford.rsl.conrad.filtering.PrimaryModulationScatterCorrectionTool
 
isClockwise() - Method in class edu.stanford.rsl.conrad.geometry.splines.SurfaceBSpline
 
isClockwise() - Method in class edu.stanford.rsl.conrad.geometry.splines.TimeVariantSurfaceBSpline
 
isClockwise() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLCylinder
 
isClockwise() - Method in interface edu.stanford.rsl.conrad.opencl.OpenCLEvaluatable
 
isClockwise() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLSphere
 
isClockwise() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLUniformBSpline
 
isConfigured() - Method in interface edu.stanford.rsl.apps.gui.GUIConfigurable
Is true if the object was successfully configured
isConfigured() - Method in class edu.stanford.rsl.apps.gui.pointselector.PointSelectorWorker
 
isConfigured() - Method in class edu.stanford.rsl.apps.gui.roi.EvaluateROI
 
isConfigured() - Method in class edu.stanford.rsl.conrad.cuda.CUDAForwardProjector
returns whether the projector was already configured or not.
isConfigured() - Method in class edu.stanford.rsl.conrad.cuda.CUDAForwardProjectorWithMotion
returns whether the projector was already configured or not.
isConfigured() - Method in class edu.stanford.rsl.conrad.filtering.ImageFilteringTool
 
isConfigured() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.blocks.ImageProcessingBlock
 
isConfigured() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.RampFilter
 
isConfigured() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLForwardProjector
returns whether the projector was already configured or not.
isConfigured() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLForwardProjectorWithMotion
returns whether the projector was already configured or not.
isConfigured() - Method in class edu.stanford.rsl.conrad.phantom.AnalyticPhantom
 
isConfigured() - Method in class edu.stanford.rsl.conrad.phantom.renderer.PhantomRenderer
 
isConfigured() - Method in class edu.stanford.rsl.conrad.phantom.workers.SliceWorker
 
isConfigured() - Method in class edu.stanford.rsl.conrad.physics.absorption.MonochromaticAbsorptionModel
 
isConfigured() - Method in class edu.stanford.rsl.conrad.physics.absorption.PolychromaticAbsorptionModel
 
isConfigured() - Method in class edu.stanford.rsl.conrad.pipeline.BufferedProjectionSink
 
isDebug() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.ExtrapolatedTrajectory
 
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.AbsoluteValueTool
Is not device, but pipeline dependent.
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.ApplyHounsfieldScaling
 
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.ApplyLambdaWeightingTool
 
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.AtractResidual2D
 
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.BilateralFilteringTool
Bilateral Filtering is just just for noise filtering here and is hence not device dependent.
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.CosineWeightingTool
Cosine filtering depends on the projection geometry and is hence not device depdendent.
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.DynamicDensityOptimizationScatterCorrectionTool
Scatter correction is device dependent.
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.ExtremeValueTruncationFilter
The use may differ.
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.FastRadialSymmetryTool
 
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.FiducialMarkerDetectionTool
 
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.Filtering2DTool
 
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.HilbertFilteringTool
 
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.HorizontalFlippingTool
Is not device, but pipeline dependent.
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.HoughFilteringTool
 
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.ImageConstantMathFilter
The use may differ.
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.ImageFilteringTool
returns true, if the filter models or compensates device dependent, i.e.
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.ImageJParallelTool
 
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.ImageMathFilter
The use may differ.
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.KinectBasedDetectorSaturationCorrectionTool
 
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.LaplaceFilteringTool
 
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.LogPoissonNoiseFilteringTool
Cosine filtering depends on the projection geometry and is hence not device depdendent.
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.MeanFilteringTool
is an image filter for noise reduction and hence not device dependent.
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.MeanMarkerBasedProjectionShiftingTool
 
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.MeanMarkerBasedProjectionShiftingToolForXCAT
 
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.MedianFilteringTool
is an image filter for noise reduction and hence not device dependent.
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.AnisotropicStructureTensorNoiseFilter
 
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.BilateralFilter3D
 
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.BlockWiseStructureTensor
 
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.DiaphragmTrackingTool
 
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.IdentityTransformFilter
 
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.IterativeReconstructionFilter
 
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.Lambda3DDerivativeFilter
 
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.ProjectionSortingFilter
 
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.Triangulation
 
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.NonLinearGainCorrectionTool
 
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.NumericalDerivativeComputationTool
 
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.NumericalLinewiseAntiderivativeFilteringTool
 
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.PoissonNoiseFilteringTool
Cosine filtering depends on the projection geometry and is hence not device depdendent.
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.PrimaryModulationScatterCorrectionTool
Scatter correction is not device dependent.
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.RampFilteringTool
Used to correct for the over-sampling of the projection center in Fourier domain by back projection Not device dependent.
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.redundancy.ParkerWeightingTool
Is used to compensate ambiguities caused by double rays.
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.Rotate90DegreeLeftTool
Is not device, but pipeline dependent.
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.ThinPlateSplinesBasedProjectionWarpingTool
 
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.ThinPlateSplinesBasedProjectionWarpingToolForXCAT
 
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.TruncationCorrectionTool
Used to compensate truncation.
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.filtering.VolumeAttenuationFactorCorrectionTool
beam hardening is also device dependent.
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.pipeline.IndividualImagePipelineFilteringTool
 
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.reconstruction.FBPReconstructionFilter
 
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.IterativeReconstruction
 
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.reconstruction.IterativeReconstruction
 
isDeviceDependent() - Method in class edu.stanford.rsl.conrad.reconstruction.SimpleIterativeReconstruction
 
isEmpty() - Method in class edu.stanford.rsl.conrad.geometry.shapes.compound.CompoundShape
 
isEmpty() - Method in class edu.stanford.rsl.conrad.geometry.shapes.compound.LinearOctree
 
isEmpty() - Method in class edu.stanford.rsl.conrad.rendering.PrioritizableScene
 
isEmpty() - Method in class edu.stanford.rsl.conrad.rendering.SimpleScene
 
isExited() - Method in class edu.stanford.rsl.apps.gui.ConfigurationFrame
 
isExited() - Method in class edu.stanford.rsl.apps.gui.ConfigurePipelineFrame
 
isFastVOIMode() - Method in class edu.stanford.rsl.conrad.reconstruction.VOIBasedReconstructionFilter
 
isFullRank() - Method in class edu.stanford.rsl.conrad.numerics.DecompositionQR
Specifies whether the input Matrix $A$ has full rank.
isFullRank() - Method in class edu.stanford.rsl.conrad.numerics.DecompositionRQ
Specifies whether the input Matrix $A$ has full rank.
isHorizontal() - Method in class edu.stanford.rsl.conrad.filtering.NumericalDerivativeComputationTool
 
isIdentity(double) - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix
Determines if matrix is an identity matrix
isInside(PointND) - Method in class edu.stanford.rsl.conrad.geometry.ConvexHull
Tests whether the point is inside the convex hull.
isInTriangle(PointND) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Triangle
Computes whether the given point is inside of the triangle.
isLittleEndian() - Method in class edu.stanford.rsl.conrad.io.IndividualFilesProjectionDataSink
 
isMember(PointND) - Method in class edu.stanford.rsl.conrad.geometry.shapes.ArbitrarySurface
 
isMember(PointND) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Box
 
isMember(PointND) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.QuadricSurface
 
isMember(PointND) - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.SimpleSurface
Determines if the given point in within the bounds of shape;
isNaN(double[]) - Static method in class edu.stanford.rsl.conrad.utils.DoubleArrayUtil
tests if any of the values in the given array is NaN
isNaN(float[]) - Static method in class edu.stanford.rsl.conrad.utils.FloatArrayUtil
tests if any of the values in the given array is NaN
isNormalizeMode() - Static method in class edu.stanford.rsl.conrad.geometry.General
 
isOrthogonal(double) - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix
Determines if matrix is orthogonal
isOverlap() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.AnisotropicStructureTensorNoiseFilter
 
isPowerOfTwo(int) - Static method in class edu.stanford.rsl.conrad.utils.FFTUtil
Returns true if the number is a power of two
isRigidMotion2D(double) - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix
Determines if matrix is a rigid motion matrix
isRigidMotion3D(double) - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix
Determines if matrix is a rigid motion matrix
isRotation2D(double) - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix
Determines if matrix is a rotation matrix
isRotation3D(double) - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix
Determines if matrix is a rotation matrix
isSatisfiedBy(PointND) - Method in class edu.stanford.rsl.conrad.geometry.bounds.AbstractBoundingCondition
Determines whether the point is satisfied by the bounding condition
isSatisfiedBy(PointND) - Method in class edu.stanford.rsl.conrad.geometry.bounds.BoundingBox
 
isSatisfiedBy(PointND) - Method in class edu.stanford.rsl.conrad.geometry.bounds.HalfSpaceBoundingCondition
 
isSatisfiedBy(PointND) - Method in class edu.stanford.rsl.conrad.geometry.bounds.QuadricBoundingCondition
 
isSaveToDisk() - Method in class edu.stanford.rsl.apps.gui.ConfigurePipelineFrame
 
isShowAbsoluteTensor() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.AnisotropicStructureTensorNoiseFilter
 
isShowProgress() - Method in class edu.stanford.rsl.conrad.io.FileProjectionSource
 
isShowStatus() - Method in class edu.stanford.rsl.conrad.parallel.ParallelThreadExecutor
 
isShowStatus() - Method in class edu.stanford.rsl.conrad.phantom.workers.SliceWorker
 
isSingular(double) - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix
 
isSpecialOrthogonal(double) - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix
 
isSquare() - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix
 
isTimeVariant() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLCylinder
 
isTimeVariant() - Method in interface edu.stanford.rsl.conrad.opencl.OpenCLEvaluatable
 
isTimeVariant() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLSphere
 
isTimeVariant() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLTimeVariantSurfaceBSpline
 
isTimeVariant() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLUniformBSpline
 
isTimeVariant() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLUniformSurfaceBSpline
 
isTwoD() - Method in class edu.stanford.rsl.conrad.filtering.NumericalDerivativeComputationTool
 
isUpperTriangular() - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix
Test for upper triangularity of a matrix.
isUseGarbageCollection() - Static method in class edu.stanford.rsl.conrad.utils.CONRAD
 
isWithinCuboid(PointND, PointND, PointND) - Static method in class edu.stanford.rsl.conrad.geometry.General
Method to check whether a point is within a given cubiod defined by min and max.
itemStateChanged(ItemEvent) - Method in class edu.stanford.rsl.conrad.phantom.electrondensity.CrisEDPhantomGUI
 
iterate() - Method in class edu.stanford.rsl.conrad.data.iterators.PointwiseIterator1D
 
iterate() - Method in class edu.stanford.rsl.conrad.data.iterators.PointwiseIterator2D
 
iterate() - Method in class edu.stanford.rsl.conrad.data.iterators.PointwiseIterator3D
 
iterativeReconstruct() - Method in class edu.stanford.rsl.conrad.reconstruction.DistanceDrivenBasedReconstruction
 
iterativeReconstruct() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.DistanceDrivenBasedReconstruction
 
iterativeReconstruct() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.IterativeReconstruction
 
iterativeReconstruct() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.LeastSquaresCG
 
iterativeReconstruct() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.PenalizedLeastSquareART
 
iterativeReconstruct() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.RayDrivenBasedReconstruction
 
iterativeReconstruct() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.SeparableFootprintsBasedReconstruction
 
iterativeReconstruct() - Method in class edu.stanford.rsl.conrad.reconstruction.IterativeReconstruction
 
iterativeReconstruct() - Method in class edu.stanford.rsl.conrad.reconstruction.RayDrivenBasedReconstruction
 
iterativeReconstruct() - Method in class edu.stanford.rsl.conrad.reconstruction.SeparableFootprintsBasedReconstruction
 
IterativeReconstruction - Class in edu.stanford.rsl.conrad.reconstruction.iterative
All iterative reconstruction algorithms are based on the iterative reconstruction filter The iterative reconstruction is the abstract class that describe a general outline for a iterative reconstruction algorithm.
IterativeReconstruction() - Constructor for class edu.stanford.rsl.conrad.reconstruction.iterative.IterativeReconstruction
 
IterativeReconstruction - Class in edu.stanford.rsl.conrad.reconstruction
All iterative reconstruction algorithms are based on the iterative reconstruction filter The iterative reconstruction is the abstract class that describe a general outline for a iterative reconstruction algorithm.
IterativeReconstruction() - Constructor for class edu.stanford.rsl.conrad.reconstruction.IterativeReconstruction
 
IterativeReconstructionBlock - Class in edu.stanford.rsl.conrad.filtering.multiprojection.blocks
Class implements the processing for a straight forward 3D bilateral filter.
IterativeReconstructionBlock() - Constructor for class edu.stanford.rsl.conrad.filtering.multiprojection.blocks.IterativeReconstructionBlock
 
IterativeReconstructionFilter - Class in edu.stanford.rsl.conrad.filtering.multiprojection
 
IterativeReconstructionFilter() - Constructor for class edu.stanford.rsl.conrad.filtering.multiprojection.IterativeReconstructionFilter
 
IterativeReconstructionTestA - Class in edu.stanford.rsl.conrad.reconstruction.test
 
IterativeReconstructionTestA() - Constructor for class edu.stanford.rsl.conrad.reconstruction.test.IterativeReconstructionTestA
 
IterativeReconstructionTestB - Class in edu.stanford.rsl.conrad.reconstruction.test
 
IterativeReconstructionTestB() - Constructor for class edu.stanford.rsl.conrad.reconstruction.test.IterativeReconstructionTestB
 
iterator() - Method in class edu.stanford.rsl.conrad.geometry.shapes.compound.CompoundShape
 
iterator() - Method in class edu.stanford.rsl.conrad.geometry.shapes.compound.LinearOctree
 
iterator() - Method in class edu.stanford.rsl.conrad.rendering.PrioritizableScene
 
iterator() - Method in class edu.stanford.rsl.conrad.rendering.SimpleScene
 
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