A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

F

F(double[], String, double[], double, double) - Static method in class edu.stanford.rsl.conrad.physics.XRaySpectrum

Ref 1 Eq 11 Returns fraction of x-ray photons of energy E escaping target material.

FanBeamBackprojector2D - Class in edu.stanford.rsl.tutorial.fan

FanBeamBackprojector2D(double, double, double, int, int) - Constructor for class edu.stanford.rsl.tutorial.fan.FanBeamBackprojector2D

FanBeamComparisonToCONRAD - Class in edu.stanford.rsl.tutorial.fan

This class is used to compare the tutorial fan beam reconstruction pipeline with the pipeline that is implemented in CONRAD.

FanBeamComparisonToCONRAD() - Constructor for class edu.stanford.rsl.tutorial.fan.FanBeamComparisonToCONRAD

FanBeamParallelBeamComparison - Class in edu.stanford.rsl.tutorial

FanBeamParallelBeamComparison() - Constructor for class edu.stanford.rsl.tutorial.FanBeamParallelBeamComparison

FanBeamProjector2D - Class in edu.stanford.rsl.tutorial.fan

FanBeamProjector2D(double, double, double, double, double) - Constructor for class edu.stanford.rsl.tutorial.fan.FanBeamProjector2D

Creates a new instance of a fan-beam projector

FanBeamReconstructionExample - Class in edu.stanford.rsl.tutorial.fan

Simple example that computes and displays a reconstruction.

FanBeamReconstructionExample() - Constructor for class edu.stanford.rsl.tutorial.fan.FanBeamReconstructionExample

FanBeamWeightingComparison - Class in edu.stanford.rsl.tutorial.fan.redundancy

FanBeamWeightingComparison() - Constructor for class edu.stanford.rsl.tutorial.fan.redundancy.FanBeamWeightingComparison

FastRadialSymmetryTool - Class in edu.stanford.rsl.conrad.filtering

Tool to apply a Fast Radial Symmetry Transform on slices

FastRadialSymmetryTool() - Constructor for class edu.stanford.rsl.conrad.filtering.FastRadialSymmetryTool

FastRadialSymmetryTool(double[], double, double, ArrayList<ArrayList<double[]>>, double) - Constructor for class edu.stanford.rsl.conrad.filtering.FastRadialSymmetryTool

FBPReconstructionFilter - Class in edu.stanford.rsl.conrad.reconstruction

The FBP reconstruction filter is the abstract class that describes a general outline for a filtered backprojection algorithm.

FBPReconstructionFilter() - Constructor for class edu.stanford.rsl.conrad.reconstruction.FBPReconstructionFilter

feedFilter(ProjectionSource, boolean) - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.MultiProjectionFilter

feeds the filter from a projection Source.

fetch() - Method in class edu.stanford.rsl.conrad.cuda.CUDAVolume3D

Fetches the data from the CUDA memory to the Java memory.

fetchFromDevice(Volume3D, CUdeviceptr) - Static method in class edu.stanford.rsl.conrad.cuda.CUDAUtil

Fetches the volume from the device

fetchFromDeviceMemory(float[], CUdeviceptr) - Static method in class edu.stanford.rsl.conrad.cuda.CUDAUtil

fetches a float data array from the device and frees the memory on the device.

fft(double[]) - Static method in class edu.stanford.rsl.conrad.utils.FFTUtil

fft(double[], int) - Static method in class edu.stanford.rsl.conrad.utils.FFTUtil

fftShift(Volume3D) - Method in class edu.stanford.rsl.conrad.cuda.CUDAVolumeOperator

fftshift(double[], boolean, boolean) - Static method in class edu.stanford.rsl.conrad.utils.FFTUtil

shift zero frequency to center, or vice verse, 1D.

fftshift(float[], boolean, boolean) - Static method in class edu.stanford.rsl.conrad.utils.FFTUtil

shift zero frequency to center, or vice verse, 1D.

fftshift(double[][], boolean, boolean) - Static method in class edu.stanford.rsl.conrad.utils.FFTUtil

shift zero frequency to center, or vice verse, 2D.

fftshift(float[][], boolean, boolean) - Static method in class edu.stanford.rsl.conrad.utils.FFTUtil

shift zero frequency to center, or vice verse, 2D.

fftShift(Volume3D) - Method in class edu.stanford.rsl.conrad.volume3d.ParallelVolumeOperator

fftShift(Volume3D) - Method in class edu.stanford.rsl.conrad.volume3d.VolumeOperator

Performs the shift required for the FFT, i.e.

FFTShifter - Class in edu.stanford.rsl.conrad.volume3d.operations

FFTShifter() - Constructor for class edu.stanford.rsl.conrad.volume3d.operations.FFTShifter

FFTTests - Class in edu.stanford.rsl.conrad.data.test

FFTTests() - Constructor for class edu.stanford.rsl.conrad.data.test.FFTTests

FFTUtil - Class in edu.stanford.rsl.conrad.utils

This class is a wrapper for the FFT as implemented in JTransforms.

FFTUtil() - Constructor for class edu.stanford.rsl.conrad.utils.FFTUtil

FFTVolumeHandle - Class in edu.stanford.rsl.conrad.volume3d

Class to wrap different FFT libraries

FFTVolumeHandle(VolumeOperator) - Constructor for class edu.stanford.rsl.conrad.volume3d.FFTVolumeHandle

FHTUtil - Class in edu.stanford.rsl.conrad.utils

This class is currently unused as all transforms in OSCAR are now based on JTransforms However some of these methods may come in handy when dealing with the ImageJ implementation of the FHT.

FHTUtil() - Constructor for class edu.stanford.rsl.conrad.utils.FHTUtil

FiducialMarkerDetectionTool - Class in edu.stanford.rsl.conrad.filtering

FiducialMarkerDetectionTool() - Constructor for class edu.stanford.rsl.conrad.filtering.FiducialMarkerDetectionTool

file - Static variable in class edu.stanford.rsl.conrad.physics.materials.database.CompositionToAbsorptionEdgeMap

file - Static variable in class edu.stanford.rsl.conrad.physics.materials.database.FormulaToNameMap

file - Static variable in class edu.stanford.rsl.conrad.physics.materials.database.NameToFormulaMap

fileCopy() - Method in class edu.stanford.rsl.conrad.geometry.motion.WeightBearingBeadPositionBuilder

FileJoiner - Class in edu.stanford.rsl.conrad.utils

FileJoiner(String, String, String) - Constructor for class edu.stanford.rsl.conrad.utils.FileJoiner

fileloc - Static variable in class edu.stanford.rsl.conrad.physics.materials.database.ElementalMassAttenuationData

FilePhantom - Class in edu.stanford.rsl.tutorial.phantoms

FilePhantom(int, int, String) - Constructor for class edu.stanford.rsl.tutorial.phantoms.FilePhantom

FileProjectionSource - Class in edu.stanford.rsl.conrad.io

Class to model an abstract projection source which accesses the file system to stream the data.

FileProjectionSource() - Constructor for class edu.stanford.rsl.conrad.io.FileProjectionSource

FileTextFieldTransferHandler - Class in edu.stanford.rsl.apps.gui

FileTextFieldTransferHandler(JTextField) - Constructor for class edu.stanford.rsl.apps.gui.FileTextFieldTransferHandler

FileUtil - Class in edu.stanford.rsl.conrad.utils

FileUtil() - Constructor for class edu.stanford.rsl.conrad.utils.FileUtil

fill(Volume3D, float) - Method in class edu.stanford.rsl.conrad.cuda.CUDAVolumeOperator

fill(Grid, float) - Static method in class edu.stanford.rsl.conrad.data.PointwiseOperators

Fill a Grid with the given value

fill() - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor

Fills the current rectangular ROI.

fill(ImageProcessor) - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor

Fills pixels that are within roi and part of the mask.

fill(double) - Method in class edu.stanford.rsl.conrad.numerics.SimpleMatrix

Sets all matrix entries to the given value.

fill(double) - Method in class edu.stanford.rsl.conrad.numerics.SimpleVector

Sets all entries to the given value.

filt_calc_Nk_I(int, int, float[][]) - Static method in class edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.AnisotropicFilterFunction

Computes the orientation tensor , where k is the index of the filter direction, is the identity matrix, the orientation of the filter.

filt_gauss_relax_tensors(Volume3D[][], float) - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.AnisotropicFilterFunction

filt_get_filt_dirs(int, float[][]) - Static method in class edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.AnisotropicFilterFunction

Computes the filter directions.

filt_get_n_filters(int) - Static method in class edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.AnisotropicFilterFunction

filt_normalize_tensors(Volume3D[][], int) - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.AnisotropicFilterFunction

Normalizes the tensors and computes the tensor nor.

filt_pre_enhance(Volume3D, int, float, float, float, float) - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.AnisotropicFilterFunction

Computes an array of filtered images.

filter(int) - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor

Filters using a 3x3 neighborhood.

filterGain() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.IRRFilter

Filtering2DTool - Class in edu.stanford.rsl.conrad.filtering

Filtering tool to apply a 2D filter.

Filtering2DTool() - Constructor for class edu.stanford.rsl.conrad.filtering.Filtering2DTool

findClosestIndex(double, double[]) - Static method in class edu.stanford.rsl.conrad.utils.DoubleArrayUtil

returns the closest index in the array to the given value

findClosestIndex(float, float[]) - Static method in class edu.stanford.rsl.conrad.utils.FloatArrayUtil

returns the closest index in the array to the given value

findLutPoint(double, double, double) - Method in class edu.stanford.rsl.conrad.io.LUTConfigFile

findMinAndMax() - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor

Calculates the minimum and maximum pixel value for the entire image.

fitEllipticParaboloidToPoints(float[], float[], float[]) - Method in class edu.stanford.rsl.conrad.fitting.Quadric

fitToPoints(double[], double[]) - Method in class edu.stanford.rsl.conrad.fitting.ConstrainedRANSACFittedFunction

fitToPoints(double[], double[]) - Method in class edu.stanford.rsl.conrad.fitting.Function

Fits the function to the given input data

fitToPoints(float[], float[]) - Method in class edu.stanford.rsl.conrad.fitting.Function

fitToPoints(double[], double[]) - Method in class edu.stanford.rsl.conrad.fitting.GaussianFunction

fitToPoints(double[], double[]) - Method in class edu.stanford.rsl.conrad.fitting.IdentityFunction

fitToPoints(double[], double[]) - Method in class edu.stanford.rsl.conrad.fitting.LinearFunction

fitToPoints(double[], double[]) - Method in class edu.stanford.rsl.conrad.fitting.LogarithmicFunction

fitToPoints(double[], double[]) - Method in class edu.stanford.rsl.conrad.fitting.PolynomialFunction

fitToPoints(double[], double[], double[]) - Method in class edu.stanford.rsl.conrad.fitting.Quadric

fitToPoints(double[], double[]) - Method in class edu.stanford.rsl.conrad.fitting.RANSACFittedFunction

fitToPoints(double[], double[], double[]) - Method in class edu.stanford.rsl.conrad.fitting.Surface

Fits the function to the given input data

fitToPoints(float[], float[], float[]) - Method in class edu.stanford.rsl.conrad.fitting.Surface

fitToThreePoints(double, double, double, double, double, double) - Method in class edu.stanford.rsl.conrad.fitting.LogarithmicFunction

FlexibleFileOpener - Class in edu.stanford.rsl.conrad.io

FlexibleFileOpener(FileInfo) - Constructor for class edu.stanford.rsl.conrad.io.FlexibleFileOpener

FlexibleFileOpener(FileInfo, int) - Constructor for class edu.stanford.rsl.conrad.io.FlexibleFileOpener

FlexibleFileOpener(FileInfo, int, long) - Constructor for class edu.stanford.rsl.conrad.io.FlexibleFileOpener

flipCondition() - Method in class edu.stanford.rsl.conrad.geometry.bounds.AbstractBoundingCondition

Invert bounding space.

flipCondition() - Method in class edu.stanford.rsl.conrad.geometry.bounds.BoundingBox

flipCondition() - Method in class edu.stanford.rsl.conrad.geometry.bounds.HalfSpaceBoundingCondition

flipCondition() - Method in class edu.stanford.rsl.conrad.geometry.bounds.QuadricBoundingCondition

flipNormal() - Method in class edu.stanford.rsl.conrad.geometry.shapes.simple.Plane3D

flip the normal of the plane

flipVertical() - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor

Float32Bit - Static variable in class edu.stanford.rsl.conrad.io.IndividualFilesProjectionDataSink

FLOAT_EPSILON - Static variable in class edu.stanford.rsl.conrad.utils.CONRAD

FloatArrayUtil - Class in edu.stanford.rsl.conrad.utils

FloatArrayUtil() - Constructor for class edu.stanford.rsl.conrad.utils.FloatArrayUtil

FloatExpression - Class in edu.stanford.rsl.conrad.numerics.mathexpressions

FloatExpression(String) - Constructor for class edu.stanford.rsl.conrad.numerics.mathexpressions.FloatExpression

FloatIterator - Class in edu.stanford.rsl.conrad.data.iterators

FloatIterator(Grid) - Constructor for class edu.stanford.rsl.conrad.data.iterators.FloatIterator

FloatIterator(Grid, int, int[], float, int[], int[]) - Constructor for class edu.stanford.rsl.conrad.data.iterators.FloatIterator

FloatIterator(Grid, int, int[], float, int[]) - Constructor for class edu.stanford.rsl.conrad.data.iterators.FloatIterator

footprintsBackproject(Grid3D, Grid3D, double, int, int, int, int) - Method in class edu.stanford.rsl.conrad.geometry.SeparableFootprints

footprintsBackproject(Grid3D, Grid3D, double, int, int, int, int) - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.SeparableFootprints

footprintsProject(Grid3D, Grid3D, double, int, int, int, int) - Method in class edu.stanford.rsl.conrad.geometry.SeparableFootprints

footprintsProject(Grid3D, Grid3D, double, int, int, int, int) - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.SeparableFootprints

ForbildBox - Class in edu.stanford.rsl.conrad.phantom.forbild.shapes

This class creates a surface from a forbilddefinition.

ForbildBox(String) - Constructor for class edu.stanford.rsl.conrad.phantom.forbild.shapes.ForbildBox

ForbildCone - Class in edu.stanford.rsl.conrad.phantom.forbild.shapes

This class creates a surface from a forbilddefinition.

ForbildCone(String) - Constructor for class edu.stanford.rsl.conrad.phantom.forbild.shapes.ForbildCone

ForbildCylinder - Class in edu.stanford.rsl.conrad.phantom.forbild.shapes

This class creates a surface from a forbilddefinition.

ForbildCylinder(String) - Constructor for class edu.stanford.rsl.conrad.phantom.forbild.shapes.ForbildCylinder

ForbildEllipsoid - Class in edu.stanford.rsl.conrad.phantom.forbild.shapes

This class creates a surface from a forbilddefinition.

ForbildEllipsoid(String) - Constructor for class edu.stanford.rsl.conrad.phantom.forbild.shapes.ForbildEllipsoid

ForbildParser - Class in edu.stanford.rsl.conrad.phantom.forbild

This class adds objects defined in forbild format into a scene that can be used to create a phantom.

ForbildParser(File) - Constructor for class edu.stanford.rsl.conrad.phantom.forbild.ForbildParser

ForbildParser(File, HashMap<String, String>) - Constructor for class edu.stanford.rsl.conrad.phantom.forbild.ForbildParser

ForbildPhantom - Class in edu.stanford.rsl.conrad.phantom.forbild

This class creates forbild phantoms from configuration files

ForbildPhantom() - Constructor for class edu.stanford.rsl.conrad.phantom.forbild.ForbildPhantom

ForbildPhantom(AbstractScene) - Constructor for class edu.stanford.rsl.conrad.phantom.forbild.ForbildPhantom

ForbildShapeFactory - Class in edu.stanford.rsl.conrad.phantom.forbild

This class creates a forbild surface given an appropriate definition.

ForbildShapeFactory() - Constructor for class edu.stanford.rsl.conrad.phantom.forbild.ForbildShapeFactory

ForbildSphere - Class in edu.stanford.rsl.conrad.phantom.forbild.shapes

This class creates a surface from a forbilddefinition.

ForbildSphere(String) - Constructor for class edu.stanford.rsl.conrad.phantom.forbild.shapes.ForbildSphere

forceSymmetryComplexDoubleArray(double[]) - Static method in class edu.stanford.rsl.conrad.utils.DoubleArrayUtil

Forces an complex double array to be symmetric.

forceSymmetryComplexDoubleArray(float[]) - Static method in class edu.stanford.rsl.conrad.utils.FloatArrayUtil

Forces an complex float array to be symmetric.

forceSymmetryRealArray(float[]) - Static method in class edu.stanford.rsl.conrad.utils.FloatArrayUtil

Forces a real float array to be symmetric.

forceSymmetryRealDoubleArray(double[]) - Static method in class edu.stanford.rsl.conrad.utils.DoubleArrayUtil

Forces a real double array to be symmetric.

FORE - Static variable in class edu.stanford.rsl.apps.gui.blobdetection.ConnectedComponent3D

Foreground value

FormulaToNameMap - Class in edu.stanford.rsl.conrad.physics.materials.database

Persistent and Extensible Map from material formula to material name.

FormulaToNameMap() - Constructor for class edu.stanford.rsl.conrad.physics.materials.database.FormulaToNameMap

forwardproject(Grid3D, Grid3D) - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.DistanceDrivenBasedReconstruction

forwardproject() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.RayDrivenBasedReconstruction

forwardproject() - Method in class edu.stanford.rsl.conrad.reconstruction.RayDrivenBasedReconstruction

forwardTransform(Pointer, int[]) - Method in class edu.stanford.rsl.conrad.cuda.CUDAFFTVolumeHandle

Performs a forward 3-D FFT on the given volume in the CUDA memory.

forwardTransform(Volume3D) - Method in class edu.stanford.rsl.conrad.cuda.CUDAFFTVolumeHandle

forwardTransform(Volume3D) - Method in class edu.stanford.rsl.conrad.volume3d.FFTVolumeHandle

Performs a forward Fast Fourier Transform of the Volume

forwardTransform(Volume3D) - Method in class edu.stanford.rsl.conrad.volume3d.JTransformsFFTVolumeHandle

FourierDomainSignal(double[][]) - Method in class edu.stanford.rsl.conrad.phantom.SheppLogan3D

Given a list of (kx,ky,kz), the k-space signals at those locations are returned.

FourierDomainSignal(double, double, double) - Method in class edu.stanford.rsl.conrad.phantom.SheppLogan3D

returning the complex signal evaluated at ( kx, ky, kz) in an array of length 2, i.e.

fromPolar(double, double) - Static method in class edu.stanford.rsl.conrad.data.Complex

Function - Class in edu.stanford.rsl.conrad.fitting

Class to describe an abstract function that can be fiited to a set of 2D Points.

Function() - Constructor for class edu.stanford.rsl.conrad.fitting.Function

FunctionExpression - Class in edu.stanford.rsl.conrad.numerics.mathexpressions

A wrapper class for functions

FunctionExpression(String, AbstractMathExpression) - Constructor for class edu.stanford.rsl.conrad.numerics.mathexpressions.FunctionExpression

FunctionTest - Class in edu.stanford.rsl.conrad.fitting.test

Class to test the functions.

FunctionTest() - Constructor for class edu.stanford.rsl.conrad.fitting.test.FunctionTest

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z