A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

P

paddGrid(Grid1D, int) - Method in class edu.stanford.rsl.tutorial.motionEstimation.SmoothKernel1D

paddGrid(Grid1D, int) - Method in class edu.stanford.rsl.tutorial.motionEstimation.SobelKernel1D

padImageProcessor(ImageProcessor, int) - Static method in class edu.stanford.rsl.conrad.utils.FHTUtil

Image is padded with 0.

padImageProcessor(ImageProcessor) - Static method in class edu.stanford.rsl.conrad.utils.FHTUtil

Image is padded with 0.

parallel - Static variable in class edu.stanford.rsl.conrad.parallel.ParallelThreadExecutor

ParallelBackprojector2D - Class in edu.stanford.rsl.tutorial.parallel

Implementation of a simple parallel backprojector.

ParallelBackprojector2D(int, int, float, float) - Constructor for class edu.stanford.rsl.tutorial.parallel.ParallelBackprojector2D

Sampling of projections is defined in the constructor.

ParallelImageFilterPipeliner - Class in edu.stanford.rsl.conrad.pipeline

Class for running multiple ImageFilteringTools in parallel.

ParallelImageFilterPipeliner(ProjectionSource, ImageFilteringTool[], BufferedProjectionSink) - Constructor for class edu.stanford.rsl.conrad.pipeline.ParallelImageFilterPipeliner

Constructor requires an ImagePlus.

ParallelImageFilterSink - Class in edu.stanford.rsl.conrad.pipeline

ParallelImageFilterSink() - Constructor for class edu.stanford.rsl.conrad.pipeline.ParallelImageFilterSink

ParallelizableRunnable - Interface in edu.stanford.rsl.conrad.parallel

Interface for parallel runnables.

ParallelProjectionDataSinkFeeder - Class in edu.stanford.rsl.conrad.pipeline

ParallelProjectionDataSinkFeeder() - Constructor for class edu.stanford.rsl.conrad.pipeline.ParallelProjectionDataSinkFeeder

ParallelProjectionPhantomRenderer - Class in edu.stanford.rsl.conrad.phantom.renderer

Class to enable parallel processing of slices of the target volume.

ParallelProjectionPhantomRenderer() - Constructor for class edu.stanford.rsl.conrad.phantom.renderer.ParallelProjectionPhantomRenderer

ParallelProjector2D - Class in edu.stanford.rsl.tutorial.parallel

Implementation of a simple parallel projector.

ParallelProjector2D(double, double, double, double) - Constructor for class edu.stanford.rsl.tutorial.parallel.ParallelProjector2D

Sampling of projections is defined in the constructor.

ParallelReconExample - Class in edu.stanford.rsl.tutorial.parallel

This is a simple example of a parallel-beam reconstruction.

ParallelReconExample() - Constructor for class edu.stanford.rsl.tutorial.parallel.ParallelReconExample

ParallelThread - Class in edu.stanford.rsl.conrad.parallel

Thread to be run with a ParallelThreadExecutor.

ParallelThread() - Constructor for class edu.stanford.rsl.conrad.parallel.ParallelThread

ParallelThreadExecutor - Class in edu.stanford.rsl.conrad.parallel

Class to execute multiple ParallelizeableRunnables in parallel.

ParallelThreadExecutor(ParallelizableRunnable[]) - Constructor for class edu.stanford.rsl.conrad.parallel.ParallelThreadExecutor

In order to have the threads performed in parallel just an Array of ParallelizableRunnables is passed to the contructor of the ParallelThreadExecutor.

ParallelThreadExecutor(ParallelizableRunnable[], int) - Constructor for class edu.stanford.rsl.conrad.parallel.ParallelThreadExecutor

ParallelVolumeOperation - Class in edu.stanford.rsl.conrad.volume3d.operations

ParallelVolumeOperation() - Constructor for class edu.stanford.rsl.conrad.volume3d.operations.ParallelVolumeOperation

ParallelVolumeOperator - Class in edu.stanford.rsl.conrad.volume3d

ParallelVolumeOperator() - Constructor for class edu.stanford.rsl.conrad.volume3d.ParallelVolumeOperator

ParkerWeightingTool - Class in edu.stanford.rsl.conrad.filtering.redundancy

Implementation of Parker weights.

ParkerWeightingTool() - Constructor for class edu.stanford.rsl.conrad.filtering.redundancy.ParkerWeightingTool

ParkerWeights - Class in edu.stanford.rsl.tutorial.fan.redundancy

ParkerWeights(double, double, double, double, double) - Constructor for class edu.stanford.rsl.tutorial.fan.redundancy.ParkerWeights

ParserFactory - Class in edu.stanford.rsl.conrad.utils.parsers

Retrieves appropriate phaser given a filename

ParserFactory() - Constructor for class edu.stanford.rsl.conrad.utils.parsers.ParserFactory

ParzenWindowMotionField - Class in edu.stanford.rsl.conrad.geometry.motion

This is an abstract class to describe a motion field that uses a Parzen window for interpolation.

ParzenWindowMotionField(double) - Constructor for class edu.stanford.rsl.conrad.geometry.motion.ParzenWindowMotionField

Contructor

PATH_TO_CALIBRATION - Static variable in class edu.stanford.rsl.conrad.utils.RegKeys

Entry to locate the calibration files of a certain CT scanner.

PATH_TO_CONTROL - Static variable in class edu.stanford.rsl.conrad.utils.RegKeys

Entry to locate the control files of a certain CT scanner.

PDS2BaseMaterialCTNumber - Static variable in class edu.stanford.rsl.conrad.physics.Constants

PenalizedLeastSquareART - Class in edu.stanford.rsl.conrad.reconstruction.iterative

PenalizedLeastSquareART(Trajectory) - Constructor for class edu.stanford.rsl.conrad.reconstruction.iterative.PenalizedLeastSquareART

PenalizedLeastSquareART(Trajectory, int) - Constructor for class edu.stanford.rsl.conrad.reconstruction.iterative.PenalizedLeastSquareART

PenalizedLeastSquareART(Trajectory, int, float, float) - Constructor for class edu.stanford.rsl.conrad.reconstruction.iterative.PenalizedLeastSquareART

performOperation() - Method in class edu.stanford.rsl.conrad.volume3d.operations.AddSlabs

performOperation() - Method in class edu.stanford.rsl.conrad.volume3d.operations.AddSlabScalar

performOperation() - Method in class edu.stanford.rsl.conrad.volume3d.operations.CopySlabData

performOperation() - Method in class edu.stanford.rsl.conrad.volume3d.operations.DivideSlabs

performOperation() - Method in class edu.stanford.rsl.conrad.volume3d.operations.FFTShifter

performOperation() - Method in class edu.stanford.rsl.conrad.volume3d.operations.MaxOfSlab

performOperation() - Method in class edu.stanford.rsl.conrad.volume3d.operations.MeanOfSlab

performOperation() - Method in class edu.stanford.rsl.conrad.volume3d.operations.MinOfSlab

performOperation() - Method in class edu.stanford.rsl.conrad.volume3d.operations.MinOfSlabs

performOperation() - Method in class edu.stanford.rsl.conrad.volume3d.operations.MultiplySlabs

performOperation() - Method in class edu.stanford.rsl.conrad.volume3d.operations.MultiplySlabScalar

performOperation() - Method in class edu.stanford.rsl.conrad.volume3d.operations.ParallelVolumeOperation

performOperation() - Method in class edu.stanford.rsl.conrad.volume3d.operations.VoxelOperation

PeriodicTimeWarper - Class in edu.stanford.rsl.conrad.geometry.motion.timewarp

Implements a regular periodic time warping.

PeriodicTimeWarper() - Constructor for class edu.stanford.rsl.conrad.geometry.motion.timewarp.PeriodicTimeWarper

phantom - Static variable in class edu.stanford.rsl.apps.Conrad

Phantom - Class in edu.stanford.rsl.tutorial.phantoms

Phantom(int, int) - Constructor for class edu.stanford.rsl.tutorial.phantoms.Phantom

Phantom(int, int, String) - Constructor for class edu.stanford.rsl.tutorial.phantoms.Phantom

Phantom3D - Class in edu.stanford.rsl.tutorial.phantoms

Phantom3D(int, int, int) - Constructor for class edu.stanford.rsl.tutorial.phantoms.Phantom3D

Phantom3D(int, int, int, String) - Constructor for class edu.stanford.rsl.tutorial.phantoms.Phantom3D

phantom4D - Static variable in class edu.stanford.rsl.apps.Conrad

PhantomMaker - Class in edu.stanford.rsl.apps.gui

PhantomMaker() - Constructor for class edu.stanford.rsl.apps.gui.PhantomMaker

PhantomRenderer - Class in edu.stanford.rsl.conrad.phantom.renderer

Abstract class to describe a numerical phantom.

PhantomRenderer() - Constructor for class edu.stanford.rsl.conrad.phantom.renderer.PhantomRenderer

PhysicalObject - Class in edu.stanford.rsl.conrad.physics

PhysicalObject() - Constructor for class edu.stanford.rsl.conrad.physics.PhysicalObject

PhysicalObject(PhysicalObject) - Constructor for class edu.stanford.rsl.conrad.physics.PhysicalObject

PhysicalPoint - Class in edu.stanford.rsl.conrad.physics

PhysicalPoint(PointND) - Constructor for class edu.stanford.rsl.conrad.physics.PhysicalPoint

PhysicalPoint(SimpleVector) - Constructor for class edu.stanford.rsl.conrad.physics.PhysicalPoint

PhysicalPoint(double...) - Constructor for class edu.stanford.rsl.conrad.physics.PhysicalPoint

physicalToIndex(double) - Method in class edu.stanford.rsl.conrad.data.Grid1D

physicalToIndex(double, double) - Method in class edu.stanford.rsl.conrad.data.Grid2D

physicalToIndex(double, double, double) - Method in class edu.stanford.rsl.conrad.data.Grid3D

PipelineTests - Class in edu.stanford.rsl.conrad.pipeline

PipelineTests() - Constructor for class edu.stanford.rsl.conrad.pipeline.PipelineTests

PlanarMotionField - Class in edu.stanford.rsl.conrad.geometry.motion

Class to project a MotionField onto a plane.

PlanarMotionField(MotionField, SimpleVector) - Constructor for class edu.stanford.rsl.conrad.geometry.motion.PlanarMotionField

Plane3D - Class in edu.stanford.rsl.conrad.geometry.shapes.simple

There are 3 representations for a plane: The parametric representation defines the plane using a point P and two non-colinear vectors u and v, so that the plane is defined by .

Plane3D(PointND, SimpleVector, SimpleVector) - Constructor for class edu.stanford.rsl.conrad.geometry.shapes.simple.Plane3D

Creates a plane from the given parametric representation .

Plane3D(SimpleVector, double) - Constructor for class edu.stanford.rsl.conrad.geometry.shapes.simple.Plane3D

Creates a plane from the given normal form .

Plane3D(PointND, SimpleVector) - Constructor for class edu.stanford.rsl.conrad.geometry.shapes.simple.Plane3D

Creates a plane from a given point in the plane and a vector normal to the plane so that .

Plane3D(PointND...) - Constructor for class edu.stanford.rsl.conrad.geometry.shapes.simple.Plane3D

Initializes the plane to the one with minimum sum of squared distances from all given points.

PlasticineMaterialCTNumber - Static variable in class edu.stanford.rsl.conrad.physics.Constants

plotCompareGrayValues(ImageProcessor, ImageProcessor, Function) - Static method in class edu.stanford.rsl.conrad.utils.VisualizationUtil

Point2D - Class in edu.stanford.rsl.conrad.geometry.shapes.simple

Wrapper class to model a 2D point.

Point2D(double...) - Constructor for class edu.stanford.rsl.conrad.geometry.shapes.simple.Point2D

Point3D - Class in edu.stanford.rsl.conrad.geometry.shapes.simple

Wrapper class to model a 3D point.

Point3D(double...) - Constructor for class edu.stanford.rsl.conrad.geometry.shapes.simple.Point3D

Creates a new 3D Point from a list of coordinates.

Point3D(PointND) - Constructor for class edu.stanford.rsl.conrad.geometry.shapes.simple.Point3D

Copy constructor.

PointBasedMotionField - Class in edu.stanford.rsl.conrad.geometry.motion

Implements a linear interpolating motion field based on points over time.

PointBasedMotionField(TimeVariantSurfaceBSpline[], int) - Constructor for class edu.stanford.rsl.conrad.geometry.motion.PointBasedMotionField

PointBasedMotionField(ArrayList<TimeVariantSurfaceBSpline>, int) - Constructor for class edu.stanford.rsl.conrad.geometry.motion.PointBasedMotionField

PointBasedMotionField(PointND[][], int) - Constructor for class edu.stanford.rsl.conrad.geometry.motion.PointBasedMotionField

PointND - Class in edu.stanford.rsl.conrad.geometry.shapes.simple

Class to model points of arbitrary dimension.

PointND(SimpleVector) - Constructor for class edu.stanford.rsl.conrad.geometry.shapes.simple.PointND

Creates a new point of the specified dimension

PointND(PointND) - Constructor for class edu.stanford.rsl.conrad.geometry.shapes.simple.PointND

Copy constructor

PointND(double...) - Constructor for class edu.stanford.rsl.conrad.geometry.shapes.simple.PointND

Creates a new point of a given array or list of double values.

PointSelector - Class in edu.stanford.rsl.apps.gui.pointselector

This code was edited or generated using CloudGarden's Jigloo SWT/Swing GUI Builder, which is free for non-commercial use.

PointSelector() - Constructor for class edu.stanford.rsl.apps.gui.pointselector.PointSelector

PointSelectorWorker - Class in edu.stanford.rsl.apps.gui.pointselector

PointSelectorWorker() - Constructor for class edu.stanford.rsl.apps.gui.pointselector.PointSelectorWorker

PointwiseIterator - Class in edu.stanford.rsl.conrad.data.iterators

PointwiseIterator() - Constructor for class edu.stanford.rsl.conrad.data.iterators.PointwiseIterator

PointwiseIterator(Grid) - Constructor for class edu.stanford.rsl.conrad.data.iterators.PointwiseIterator

PointwiseIterator1D - Class in edu.stanford.rsl.conrad.data.iterators

PointwiseIterator1D(Grid) - Constructor for class edu.stanford.rsl.conrad.data.iterators.PointwiseIterator1D

PointwiseIterator2D - Class in edu.stanford.rsl.conrad.data.iterators

PointwiseIterator2D(Grid) - Constructor for class edu.stanford.rsl.conrad.data.iterators.PointwiseIterator2D

PointwiseIterator3D - Class in edu.stanford.rsl.conrad.data.iterators

PointwiseIterator3D(Grid) - Constructor for class edu.stanford.rsl.conrad.data.iterators.PointwiseIterator3D

PointwiseOperators - Class in edu.stanford.rsl.conrad.data

The collection of all operators working point-wise on Grid data.

PointwiseOperators() - Constructor for class edu.stanford.rsl.conrad.data.PointwiseOperators

PoissonNoiseFilteringTool - Class in edu.stanford.rsl.conrad.filtering

Applies Poisson noise to the input image.

PoissonNoiseFilteringTool() - Constructor for class edu.stanford.rsl.conrad.filtering.PoissonNoiseFilteringTool

poissonRandomNumber(double) - Static method in class edu.stanford.rsl.conrad.utils.StatisticsUtil

Generates a Poisson distributed random number.

poissonRandomNumberBig(double) - Static method in class edu.stanford.rsl.conrad.utils.StatisticsUtil

Generates a Poisson distributed random number.

poissonRandomNumberSmall(double) - Static method in class edu.stanford.rsl.conrad.utils.StatisticsUtil

Generates a Poisson distributed random number.

PolychromaticAbsorptionModel - Class in edu.stanford.rsl.conrad.physics.absorption

Polychromatic Absorption Model with dynamic spectrum support.

PolychromaticAbsorptionModel() - Constructor for class edu.stanford.rsl.conrad.physics.absorption.PolychromaticAbsorptionModel

PolychromaticXRaySpectrum - Class in edu.stanford.rsl.conrad.physics

This class creates a model of a polychromatic X Ray spectrum.

PolychromaticXRaySpectrum() - Constructor for class edu.stanford.rsl.conrad.physics.PolychromaticXRaySpectrum

Creates a new polychromatic X-Ray spectrum satisfying default parameters.

PolychromaticXRaySpectrum(double) - Constructor for class edu.stanford.rsl.conrad.physics.PolychromaticXRaySpectrum

Creates a new polychromatic X-Ray spectrum with successive energies having a difference of delta

PolychromaticXRaySpectrum(double, double, double, double, double) - Constructor for class edu.stanford.rsl.conrad.physics.PolychromaticXRaySpectrum

Creates a new polychromatic X-Ray spectrum satisfying the parameters below.

PolygonBasedVolumeOfInterest - Class in edu.stanford.rsl.conrad.reconstruction.voi

VOI based on a polygon definition which is identical for each slice.

PolygonBasedVolumeOfInterest() - Constructor for class edu.stanford.rsl.conrad.reconstruction.voi.PolygonBasedVolumeOfInterest

PolygonBasedVolumeOfInterest(String) - Constructor for class edu.stanford.rsl.conrad.reconstruction.voi.PolygonBasedVolumeOfInterest

PolynomialFunction - Class in edu.stanford.rsl.conrad.fitting

PolynomialFunction() - Constructor for class edu.stanford.rsl.conrad.fitting.PolynomialFunction

Polystyrene_mdensity - Static variable in class edu.stanford.rsl.conrad.physics.Constants

Polystyrene mass density 1.06E+00 (g/cm3)

PolystyreneCTValue - Static variable in class edu.stanford.rsl.conrad.physics.Constants

pow(double[], double) - Static method in class edu.stanford.rsl.conrad.utils.DoubleArrayUtil

calls Math.pow for each element of the array

pow(float[], float) - Static method in class edu.stanford.rsl.conrad.utils.FloatArrayUtil

calls Math.pow for each element of the array

powerFromFHT(FHT) - Static method in class edu.stanford.rsl.conrad.utils.FHTUtil

Computes the power spectrum of an FFT given the values of an FHT.

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.cuda.CUDABackProjector

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.cuda.CUDACompensatedBackProjector

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.filtering.ApplyLambdaWeightingTool

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.filtering.AtractResidual2D

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.filtering.CosineWeightingTool

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.filtering.DynamicDensityOptimizationScatterCorrectionTool

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.filtering.Filtering2DTool

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.filtering.ImageConstantMathFilter

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.filtering.ImageFilteringTool

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.filtering.ImageJParallelTool

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.filtering.ImageMathFilter

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.filtering.IndividualImageFilteringTool

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.filtering.LogPoissonNoiseFilteringTool

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.filtering.MeanMarkerBasedProjectionShiftingToolForXCAT

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic.AnisotropicStructureTensorNoiseFilter

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.blocks.ImageProcessingBlock

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.BlockWiseMultiProjectionFilter

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.Lambda3DDerivativeFilter

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.MultiProjectionFilter

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.filtering.PoissonNoiseFilteringTool

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.filtering.PrimaryModulationScatterCorrectionTool

Serialization for the primary modulation method

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.filtering.rampfilters.RampFilter

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.filtering.ThinPlateSplinesBasedProjectionWarpingToolForXCAT

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.geometry.trajectories.Trajectory

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.io.ImagePlusDataSink

prepareForSerialization() - Method in interface edu.stanford.rsl.conrad.io.SafeSerializable

Sets all data objects in the serialized object to null which do not implement the Serializable interface.

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLBackProjector

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.pipeline.BufferedProjectionSink

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.reconstruction.CPUSuperShortScanBackprojector

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.ModelBasedIterativeReconstruction

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.RayDrivenBasedReconstruction

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.reconstruction.ModelBasedIterativeReconstruction

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.reconstruction.MotionCompensatedSubVolumeBackprojector

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.reconstruction.MotionCompensatedVOIBasedReconstructionFilter

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.reconstruction.RayDrivenBasedReconstruction

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.reconstruction.RayWeightCorrectingCPUSuperShortScanBackprojector

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.reconstruction.ReconstructionFilter

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.reconstruction.RigidBody3DTransformationVOIBasedReconstructionFilter

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.reconstruction.RigidBody3DTransformationVOIBasedReconstructionFilterForXCAT

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.reconstruction.SubVolumeBackprojector

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.reconstruction.SuperShortScanBackprojection

Deprecated.

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.reconstruction.voi.PolygonBasedVolumeOfInterest

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.reconstruction.VOIBasedReconstructionFilter

prepareForSerialization() - Method in class edu.stanford.rsl.conrad.utils.Configuration

prepareForSerialization() - Method in class edu.stanford.rsl.tutorial.motionEstimation.OpenCLCompensatedBackProjector

prepareForSerialization() - Method in class edu.stanford.rsl.tutorial.motionEstimation.OpenCLCompensatedBackProjector1DCompressionField

prepareForSerialization() - Method in class edu.stanford.rsl.tutorial.motionEstimation.OpenCLCompensatedBackProjectorTPS

PrimaryModulationScatterCorrectionTool - Class in edu.stanford.rsl.conrad.filtering

PrimaryModulationScatterCorrectionTool() - Constructor for class edu.stanford.rsl.conrad.filtering.PrimaryModulationScatterCorrectionTool

Initialization for the primary modulation method

print(double[], NumberFormat) - Static method in class edu.stanford.rsl.conrad.utils.DoubleArrayUtil

Prints the contents of the double array on standard out.

print(String, double[], NumberFormat) - Static method in class edu.stanford.rsl.conrad.utils.DoubleArrayUtil

Prints the array on standard out and denotes the arrays name.

print(String, double[]) - Static method in class edu.stanford.rsl.conrad.utils.DoubleArrayUtil

Prints the array on standard out.

print(double[]) - Static method in class edu.stanford.rsl.conrad.utils.DoubleArrayUtil

Prints the array on standard out.

print(float[], NumberFormat) - Static method in class edu.stanford.rsl.conrad.utils.FloatArrayUtil

Prints the contents of the float array on standard out.

print(String, float[], NumberFormat) - Static method in class edu.stanford.rsl.conrad.utils.FloatArrayUtil

Prints the array on standard out and denotes the arrays name.

print(String, float[]) - Static method in class edu.stanford.rsl.conrad.utils.FloatArrayUtil

Prints the array on standard out.

print(float[]) - Static method in class edu.stanford.rsl.conrad.utils.FloatArrayUtil

Prints the array on standard out.

printAbsolute(double[]) - Static method in class edu.stanford.rsl.conrad.utils.FFTUtil

Prints the absolute values in the given array

printComplex(double[]) - Static method in class edu.stanford.rsl.conrad.utils.FFTUtil

Prints the complex values in the given array.

printOutGeometry() - Method in class edu.stanford.rsl.conrad.reconstruction.iterative.ModelBasedIterativeReconstruction

printOutGeometry() - Method in class edu.stanford.rsl.conrad.reconstruction.ModelBasedIterativeReconstruction

printSimpleMatrix(SimpleMatrix) - Static method in class edu.stanford.rsl.conrad.reconstruction.iterative.ModelBasedIterativeReconstruction

printSimpleMatrix(SimpleMatrix) - Static method in class edu.stanford.rsl.conrad.reconstruction.ModelBasedIterativeReconstruction

printSimpleMatrix(SimpleMatrix) - Static method in class edu.stanford.rsl.conrad.reconstruction.test.IterativeReconstructionTestA

printSimpleVector(SimpleVector) - Static method in class edu.stanford.rsl.conrad.reconstruction.iterative.ModelBasedIterativeReconstruction

printSimpleVector(SimpleVector) - Static method in class edu.stanford.rsl.conrad.reconstruction.ModelBasedIterativeReconstruction

printSize() - Method in class edu.stanford.rsl.conrad.volume3d.Volume3D

prints the dimensions of the volume to STDOUT.

PrioritizableScene - Class in edu.stanford.rsl.conrad.rendering

PrioritizableScene() - Constructor for class edu.stanford.rsl.conrad.rendering.PrioritizableScene

Priority1DRayTracer - Class in edu.stanford.rsl.conrad.rendering

Priority1DRayTracer() - Constructor for class edu.stanford.rsl.conrad.rendering.Priority1DRayTracer

PriorityRayTracer - Class in edu.stanford.rsl.conrad.rendering

PriorityRayTracer() - Constructor for class edu.stanford.rsl.conrad.rendering.PriorityRayTracer

process(Grid2D, int) - Method in class edu.stanford.rsl.conrad.filtering.multiprojection.MultiProjectionFilter

process(Grid2D, int) - Method in class edu.stanford.rsl.conrad.io.ImagePlusDataSink

process(Grid2D, int) - Method in class edu.stanford.rsl.conrad.io.IndividualFilesProjectionDataSink

process(Grid2D, int) - Method in class edu.stanford.rsl.conrad.pipeline.BufferedProjectionSink

process(Grid2D, int) - Method in class edu.stanford.rsl.conrad.pipeline.DevNullSink

process(Grid2D, int) - Method in class edu.stanford.rsl.conrad.pipeline.ParallelImageFilterSink

process(Grid2D, int) - Method in interface edu.stanford.rsl.conrad.pipeline.ProjectionSink

process(Grid2D, int) - Method in class edu.stanford.rsl.conrad.reconstruction.SuperShortScanBackprojection

Deprecated.

program - Static variable in class edu.stanford.rsl.conrad.opencl.OpenCLUtil

project() - Method in class edu.stanford.rsl.conrad.cuda.CUDAForwardProjector

Starts projection and returns Projection Data, as ImagePlus

project() - Method in class edu.stanford.rsl.conrad.cuda.CUDAForwardProjectorWithMotion

Starts projection and returns Projection Data, as ImagePlus

project(SimpleVector, SimpleVector) - Method in class edu.stanford.rsl.conrad.geometry.Projection

Projects a given voxel to a pixel and determines its visibility.

project(int) - Method in class edu.stanford.rsl.conrad.opencl.OpenCLForwardProjector

loads the actual OpenCL kernel and performs the projection

project() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLForwardProjector

Starts projection and returns Projection Data, as ImagePlus

project(int) - Method in class edu.stanford.rsl.conrad.opencl.OpenCLForwardProjectorWithMotion

loads the actual OpenCL kernel and performs the projection

project() - Method in class edu.stanford.rsl.conrad.opencl.OpenCLForwardProjectorWithMotion

Starts projection and returns Projection Data, as ImagePlus

project(CLBuffer<FloatBuffer>) - Method in class edu.stanford.rsl.conrad.opencl.OpenCLRenderer

project(boolean) - Method in class edu.stanford.rsl.conrad.pipeline.ParallelImageFilterPipeliner

This method starts the actual filtering.

project() - Method in class edu.stanford.rsl.conrad.pipeline.ParallelImageFilterPipeliner

Projection - Class in edu.stanford.rsl.conrad.geometry

This class represents a finite perspective projection (or a camera associated with it) and provides all sorts of routines for converting between different representations and obtaining geometric information.

Projection() - Constructor for class edu.stanford.rsl.conrad.geometry.Projection

Default constructor.

Projection(SimpleMatrix) - Constructor for class edu.stanford.rsl.conrad.geometry.Projection

Construct this projection from a 3x4 Matrix.

Projection(double[], double[], int[]) - Constructor for class edu.stanford.rsl.conrad.geometry.Projection

Construct this projection from GL matrices.

Projection.CameraAxisDirection - Enum in edu.stanford.rsl.conrad.geometry

PROJECTION_SAMPLING_RATE - Static variable in class edu.stanford.rsl.conrad.utils.RegKeys

Entry to set the projection sampling rate, i.e.

ProjectionLoader - Class in edu.stanford.rsl.tutorial.motionEstimation

ProjectionLoader() - Constructor for class edu.stanford.rsl.tutorial.motionEstimation.ProjectionLoader

ProjectionSink - Interface in edu.stanford.rsl.conrad.pipeline

Interface for an ImageProcessor Output Stream.

ProjectionSortingFilter - Class in edu.stanford.rsl.conrad.filtering.multiprojection

ProjectionSortingFilter() - Constructor for class edu.stanford.rsl.conrad.filtering.multiprojection.ProjectionSortingFilter

Creates a new ProjectionSortingFilter.

ProjectionSource - Interface in edu.stanford.rsl.conrad.pipeline

Interface to model an arbitrary projection source

ProjectionTableFileTrajectory - Class in edu.stanford.rsl.conrad.geometry.trajectories

ProjectionTableFileTrajectory(String, Trajectory) - Constructor for class edu.stanford.rsl.conrad.geometry.trajectories.ProjectionTableFileTrajectory

ProjectionTableFileTrajectory(Trajectory) - Constructor for class edu.stanford.rsl.conrad.geometry.trajectories.ProjectionTableFileTrajectory

ProjectionTest - Class in edu.stanford.rsl.conrad.geometry.test

ProjectionTest() - Constructor for class edu.stanford.rsl.conrad.geometry.test.ProjectionTest

projectParallel(Grid3D, ProjectionSink, boolean) - Static method in class edu.stanford.rsl.conrad.pipeline.ParallelProjectionDataSinkFeeder

projectPixelDriven(Grid3D) - Method in class edu.stanford.rsl.tutorial.cone.ConeBeamProjector

projectPixelDriven(Grid2D) - Method in class edu.stanford.rsl.tutorial.parallel.ParallelProjector2D

The pixel driven solution.

projectRayDriven(Grid2D) - Method in class edu.stanford.rsl.tutorial.fan.FanBeamProjector2D

projectRayDriven(Grid2D) - Method in class edu.stanford.rsl.tutorial.parallel.ParallelProjector2D

The ray driven solution.

projectRayDrivenCL(Grid3D) - Method in class edu.stanford.rsl.tutorial.cone.ConeBeamProjector

projectRayDrivenCL(Grid2D) - Method in class edu.stanford.rsl.tutorial.fan.FanBeamProjector2D

Input scene

projectRayDrivenCL(Grid2D) - Method in class edu.stanford.rsl.tutorial.parallel.ParallelProjector2D

projectVolumeToProjection(PointND, PointND, Projection) - Static method in class edu.stanford.rsl.conrad.geometry.General

Computes the convex hull of the projection of the eight corners of the volume to the projection.

pts - Static variable in class edu.stanford.rsl.conrad.io.VTKMeshReader

The read-in points are saved here

put(String, TreeMap<AttenuationType, NumberInterpolatingTreeMap>) - Static method in class edu.stanford.rsl.conrad.physics.materials.database.ElementalMassAttenuationData

Store mass attenuation data of element with given name

put(String, String) - Static method in class edu.stanford.rsl.conrad.physics.materials.database.FormulaToNameMap

Associates a given formula to a name.

put(Material) - Static method in class edu.stanford.rsl.conrad.physics.materials.database.MaterialsDB

Adds a new material to database.

put(String, String) - Static method in class edu.stanford.rsl.conrad.physics.materials.database.NameToFormulaMap

Associates a given name to a formula.

put(Number[], Number[]) - Method in class edu.stanford.rsl.conrad.utils.interpolation.NumberInterpolatingTreeMap

Insert a array of input and corresponding output to data structure.

put(double[], double[]) - Method in class edu.stanford.rsl.conrad.utils.interpolation.NumberInterpolatingTreeMap

Insert a array of input and corresponding output to data structure.

putPixel(int, int, int[]) - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor

Sets a pixel in the image using a one element int array.

putPixel(int, int, int) - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor

Stores the specified value at (x,y).

putPixelValue(int, int, float) - Method in class edu.stanford.rsl.conrad.data.Grid2D

Set a pixel value at position (x,y)

putPixelValue(int, int, double) - Method in class edu.stanford.rsl.conrad.data.Grid2D

Set a pixel value at position (x,y)

putPixelValue(int, int, double) - Method in class edu.stanford.rsl.conrad.io.SerializableFloatProcessor

Stores the specified real value at (x,y).

PYREX_mdensity - Static variable in class edu.stanford.rsl.conrad.physics.Constants

Pyrex glass mass density 2.23 (g/cm3)

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