Publications

WARNING: All material on this website, including papers, text, figures, and graphics is covered by Copyright © unless otherwise stated. You may browse them at your convenience (in the same spirit as you may read a journal or a proceeding article in a public library). Retrieving, copying, or distributing these files, however, may violate the copyright protection law. We recommend that the user abides international law in accessing this directory.

2018 (1 Publications, Talks and Patents)

Monographs

Mualla, Firas; Aubreville, Marc; Maier, Andreas

Microscopy

Springer Cham, 2018 (BiBTeX, Who cited this?)

2017 (1 Publications, Talks and Patents)

Articles in Conference Proceedings

Sindran, Fadi; Mualla, Firas; Haderlein, Tino; Daqrouq, Khaled; Nöth, Elmar

Automatic Preparation of Standard Arabic Phonetically Rich Written Corpora with Different Linguistic Units

Proc. Text, Speech and Dialogue; 20th International Conference, TSD 2017 (Text, Speech and Dialogue; 20th International Conference, TSD 2017), Prague, Czech Republic, 28.-31.08.2017, pp. 201-209, 2017, ISBN 978-3-319-64205-5 (BiBTeX, Who cited this?)

2016 (3 Publications, Talks and Patents)

Dissertations

Mualla, Firas

Automatic Unstained Cell Detection in Bright Field Microscopy

(BiBTeX, Who cited this?)

Journal Articles

Sindran, Fadi; Mualla, Firas; Haderlein, Tino; Daqrouq, Khaled; Nöth, Elmar

Rule-Based Standard Arabic Phonetization at Phoneme, Allophone, and Syllable Level

International Journal of Computational Linguistics (IJCL), vol. 7, no. 2, pp. 23-37, 2016 (BiBTeX, Who cited this?)

Sindran, Fadi; Mualla, Firas; Haderlein, Tino; Daqrouq, Khaled; Nöth, Elmar

Automatic Phonetization-based Statistical Linguistic Study of Standard Arabic

International Journal of Computational Linguistics (IJCL), vol. 7, no. 2, pp. 38-53, 2016 (BiBTeX, Who cited this?)

2015 (2 Publications, Talks and Patents)

Articles in Conference Proceedings

Bier, Bastian; Mualla, Firas; Steidl, Stefan; Bohr, Christopher; Neumann, Helmut; Maier, Andreas; Hornegger, Joachim

Band-Pass Filter Design by Segmentation in Frequency Domain for Detection of Epithelial Cells in Endomicroscope Images

Bildverarbeitung für die Medizin 2015 - Algorithmen, Systeme, Anwendungen, Lübeck, 15.03.2015, pp. 413-418, 2015, ISBN 978-3-662-46223-2 (BiBTeX, Who cited this?)

Sindran, Fadi; Mualla, Firas; Bobzin, Katharina; Nöth, Elmar

Automatic Robust Rule-Based Phonetization of Standard Arabic

Text, Speech, and Dialogue; 18th International Conference, TSD 2015, Pilsen, Czech Republic, 14.-17.09.2015, pp. 442-451, 2015 (BiBTeX, Who cited this?)

2014 (7 Publications, Talks and Patents)

Journal Articles

Mualla, Firas; Schöll, Simon; Sommerfeldt, Björn; Maier, Andreas; Steidl, Stefan; Buchholz, Rainer; Hornegger, Joachim

Using the Low-Pass Monogenic Signal Framework for Cell/Background Classification on Multiple Cell Lines in Bright-Field Microscope Images

International Journal of Computer Assisted Radiology and Surgery, vol. 9, no. 3, pp. 379-386, 2014 (BiBTeX, Who cited this?)

Schöll, Simon; Mualla, Firas; Sommerfeldt, Björn; Steidl, Stefan; Maier, Andreas; Buchholz, Rainer; Hornegger, Joachim

Influence of the phase effect on gradient-based and statistics-based focus measures in bright field microscopy

Journal of Microscopy, vol. 254, no. 2, pp. 65-74, 2014 (BiBTeX, Who cited this?)

Articles in Conference Proceedings

Mualla, Firas; Schöll, Simon; Sommerfeldt, Björn; Steidl, Stefan; Buchholz, Rainer; Hornegger, Joachim

Improving Joint Learning of Suspended and Adherent Cell Detection Using Low-Pass Monogenic Phase and Transport of Intensity Equation

IEEE 11th International Symposium on Biomedical Imaging (ISBI), Beijing, 29.04.2014, pp. 927-930, 2014 (BiBTeX, Who cited this?)

Mualla, Firas; Schöll, Simon; Bohr, Christopher; Neumann, Helmut; Maier, Andreas

Epithelial Cell Detection in Endomicroscopy Images of the Vocal Folds

Springer Proceedings in Physics 154, Proceedings of InterM (International Multidisciplinary Microscopy Congress), Antalya, Turkey, 10.10.2013, pp. 201-205, 2014 (BiBTeX, Who cited this?)

Schöll, Simon; Mualla, Firas; Sommerfeldt, Björn; Steidl, Stefan; Maier, Andreas

Image Preprocessing Pipeline for Bright-Field Miniature Live Cell Microscopy Prototypes

Springer Proceedings in Physics 154, Proceedings of InterM (International Multidisciplinary Microscopy Congress), Antalya, Turkey, 10.10.2013, pp. 261-267, 2014 (BiBTeX, Who cited this?)

Mualla, Firas; Schöll, Simon; Sommerfeldt, Björn; Maier, Andreas; Steidl, Stefan; Buchholz, Rainer; Hornegger, Joachim

Unsupervised Unstained Cell Detection by SIFT Keypoint Clustering and Self-labeling Algorithm

Lecture Notes in Computer Science, Volume 8675, MICCAI 2014 Proceedings, Part III (Medical Image Computing and Computer-Assisted Intervention – MICCAI 2014), Boston, MA, USA, 14.09.2014, pp. 377-384, 2014 (BiBTeX, Who cited this?)

Talks

Mualla, Firas

Improving Joint Learning of Suspended and Adherent Cell Detection Using Low-Pass Monogenic Phase and Transport of Intensity Equation (Talk)

at ISBI (IEEE 11th International Symposium on Biomedical Imaging) in Beijing, China (01.05)

2013 (11 Publications, Talks and Patents)

Journal Articles

Mualla, Firas; Schöll, Simon; Sommerfeldt, Björn; Maier, Andreas; Hornegger, Joachim

Automatic Cell Detection in Bright-Field Microscope Images Using SIFT, Random Forests, and Hierarchical Clustering

IEEE Transactions on Medical Imaging, vol. 32, no. 12, pp. 2274-2286, 2013 (BiBTeX, Who cited this?)

Articles in Conference Proceedings

Mualla, Firas; Schöll, Simon; Sommerfeldt, Björn; Hornegger, Joachim

Using the Monogenic Signal for Cell-Background Classification in Bright-Field Microscope Images

Proceedings des Workshops Bildverarbeitung für die Medizin 2013 (Bildverarbeitung für die Medizin 2013), Heidelberg, 03.03.2013, pp. 170-174, 2013 (BiBTeX, Who cited this?)

Talks

Mualla, Firas

Application of Supervised Cell Detection on Multiple Channels of the COSIR Prototype (Talk)

at PreSens GmbH (COSIR project meeting) in Regensburg (02.12)

Mualla, Firas

Using the Monogenic Signal for Cell-Background Classification in Bright-Field Microscope Images (Talk)

at Abteilung Medizinische und Biologische Informatik Deutsches Krebsforschungszentrum, Heidelberg (Bildverarbeitung für die Medizin 2013) in Heidelberg (05.03)

Mualla, Firas

About Density Estimation, Detection, and Vitality (Talk)

at Institute of Bioprocess Engineering (COSIR workshop) in Erlangen (20.02)

Mualla, Firas

Evaluation of Three Cell Detection Algorithms on Standard Bright-Field Microscope Images and Cell Density Estimation on COSIR-Prototype Images (Talk)

at PreSens GmbH (COSIR project meeting) in Regensburg (05.07)

Mualla, Firas

Improving Cell Detection Accuracy Using Agglomerative Hierarchical Clustering (Talk)

at Siemens AG (LME-Siemens meeting) in Munich (06.06)

Sembritzki, Klaus; Mualla, Firas; Petrovic, Aleksandar; Maier, Andreas; Schmidt, Sebastian; Heismann, Björn; Hornegger, Joachim; Kornhuber, Johannes

Skull-stripping Free Preprocessing Pipeline for Functional Magnetic Resonance Imaging (Talk)

at Organization for Human Brain Mapping (19th Annual Meeting of the Organization for Human Brain Mapping) in Seattle, WA, USA (18.06.)

Mualla, Firas; Schöll, Simon; Bohr, Christopher; Neumann, Helmut; Maier, Andreas

Epithelial Cell Detection in Endomicroscopy Images of the Vocal Folds (Talk)

(International Multidisciplinary Microscopy Congress) in Antalya, Turkey (11.10)

Schöll, Simon; Mualla, Firas

Image Analysis Methods for Monitoring of Cell Cultures (Talk)

at Institute of Clinical Microbiology, Immunology and Hygiene (Kick-Off Symposium Optical Imaging Center Erlangen (OICE)) in Erlangen (23.08)

Schöll, Simon; Mualla, Firas

Image Preprocessing Pipeline for Bright-Field Miniature Live Cell Microscopy Prototypes (Talk)

at Limak Limra International Hotels (International Multidisciplinary Microscopy Congress) in Antalya, Turkey (11.10)

2012 (3 Publications, Talks and Patents)

Journal Articles

Mualla, Firas; Prümmer, Marcus; Hahn, Dieter; Hornegger, Joachim

Toward Automatic Detection of Vessel Stenoses in Cerebral 3D DSA Volumes

Physics in Medicine and Biology, vol. 57, no. 9, pp. 2555-2573, 2012 (BiBTeX, Who cited this?)

Talks

Mualla, Firas

Cell Density Estimation and Cell Detection (Talk)

at Pattern Recognition Lab (COSIR project meeting) in Erlangen (18.09)

Mualla, Firas

Learning-Based Cell Detection with Evaluation on Simulated Images (Talk)

at ASTRUM IT GmbH (COSIR project meeting) in Erlangen (17.04)

2011 (2 Publications, Talks and Patents)

Talks

Mualla, Firas

Cell Counting by Learning Intensity Profiles (Talk)

at Institute of Bioprocess Engineering (COSIR project meeting) in Erlangen (18.10)

Mualla, Firas

Vessel Diseases Detection in 3D Digital Subtraction Angiography Images (Talk)

at Siemens AG, Imaging & Therapy Division (feasibility study) in Forchheim (04.05)

Contact

Address

Dr.-Ing. Firas Mualla

Alumnus of the Pattern Recognition Lab of the Friedrich-Alexander-Universität Erlangen-Nürnberg

Publications



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Department of Computer Science 5 Our Team Mualla, Firas Projects Publications Thesis Curriculum Vitae Research Publications Free Software Data Courses Curriculum Theses Press Releases Cooperations Open Positions LME Videos Ph.D. Gallery Contact Intranet Impressum Datenschutzerklärung Contact +49 9131 85 27826 +49 9131 85 27270 09.158 Address Universität Erlangen-Nürnberg Chair of Computer Science 5 (Pattern Recognition) Martensstrasse 3 91058 Erlangen Germany Driving directions Powered by	Dept. of Computer Sc. » Pattern Recognition » Our Team » Mualla, Firas » Publications Dr.-Ing. Firas Mualla Alumnus of the Pattern Recognition Lab of the Friedrich-Alexander-Universität Erlangen-Nürnberg Cell segmentation and classification in low-quality microscope images. Publications WARNING: All material on this website, including papers, text, figures, and graphics is covered by Copyright © unless otherwise stated. You may browse them at your convenience (in the same spirit as you may read a journal or a proceeding article in a public library). Retrieving, copying, or distributing these files, however, may violate the copyright protection law. We recommend that the user abides international law in accessing this directory. 2018 (1 Publications, Talks and Patents) Monographs Mualla, Firas; Aubreville, Marc; Maier, Andreas Microscopy Springer Cham, 2018 (BiBTeX, Who cited this?) 2017 (1 Publications, Talks and Patents) Articles in Conference Proceedings Sindran, Fadi; Mualla, Firas; Haderlein, Tino; Daqrouq, Khaled; Nöth, Elmar Automatic Preparation of Standard Arabic Phonetically Rich Written Corpora with Different Linguistic Units Proc. Text, Speech and Dialogue; 20th International Conference, TSD 2017 (Text, Speech and Dialogue; 20th International Conference, TSD 2017), Prague, Czech Republic, 28.-31.08.2017, pp. 201-209, 2017, ISBN 978-3-319-64205-5 (BiBTeX, Who cited this?) 2016 (3 Publications, Talks and Patents) Dissertations Mualla, Firas Automatic Unstained Cell Detection in Bright Field Microscopy (BiBTeX, Who cited this?) Journal Articles Sindran, Fadi; Mualla, Firas; Haderlein, Tino; Daqrouq, Khaled; Nöth, Elmar Rule-Based Standard Arabic Phonetization at Phoneme, Allophone, and Syllable Level International Journal of Computational Linguistics (IJCL), vol. 7, no. 2, pp. 23-37, 2016 (BiBTeX, Who cited this?) Sindran, Fadi; Mualla, Firas; Haderlein, Tino; Daqrouq, Khaled; Nöth, Elmar Automatic Phonetization-based Statistical Linguistic Study of Standard Arabic International Journal of Computational Linguistics (IJCL), vol. 7, no. 2, pp. 38-53, 2016 (BiBTeX, Who cited this?) 2015 (2 Publications, Talks and Patents) Articles in Conference Proceedings Bier, Bastian; Mualla, Firas; Steidl, Stefan; Bohr, Christopher; Neumann, Helmut; Maier, Andreas; Hornegger, Joachim Band-Pass Filter Design by Segmentation in Frequency Domain for Detection of Epithelial Cells in Endomicroscope Images Bildverarbeitung für die Medizin 2015 - Algorithmen, Systeme, Anwendungen, Lübeck, 15.03.2015, pp. 413-418, 2015, ISBN 978-3-662-46223-2 (BiBTeX, Who cited this?) Sindran, Fadi; Mualla, Firas; Bobzin, Katharina; Nöth, Elmar Automatic Robust Rule-Based Phonetization of Standard Arabic Text, Speech, and Dialogue; 18th International Conference, TSD 2015, Pilsen, Czech Republic, 14.-17.09.2015, pp. 442-451, 2015 (BiBTeX, Who cited this?) 2014 (7 Publications, Talks and Patents) Journal Articles Mualla, Firas; Schöll, Simon; Sommerfeldt, Björn; Maier, Andreas; Steidl, Stefan; Buchholz, Rainer; Hornegger, Joachim Using the Low-Pass Monogenic Signal Framework for Cell/Background Classification on Multiple Cell Lines in Bright-Field Microscope Images International Journal of Computer Assisted Radiology and Surgery, vol. 9, no. 3, pp. 379-386, 2014 (BiBTeX, Who cited this?) Schöll, Simon; Mualla, Firas; Sommerfeldt, Björn; Steidl, Stefan; Maier, Andreas; Buchholz, Rainer; Hornegger, Joachim Influence of the phase effect on gradient-based and statistics-based focus measures in bright field microscopy Journal of Microscopy, vol. 254, no. 2, pp. 65-74, 2014 (BiBTeX, Who cited this?) Articles in Conference Proceedings Mualla, Firas; Schöll, Simon; Sommerfeldt, Björn; Steidl, Stefan; Buchholz, Rainer; Hornegger, Joachim Improving Joint Learning of Suspended and Adherent Cell Detection Using Low-Pass Monogenic Phase and Transport of Intensity Equation IEEE 11th International Symposium on Biomedical Imaging (ISBI), Beijing, 29.04.2014, pp. 927-930, 2014 (BiBTeX, Who cited this?) Mualla, Firas; Schöll, Simon; Bohr, Christopher; Neumann, Helmut; Maier, Andreas Epithelial Cell Detection in Endomicroscopy Images of the Vocal Folds Springer Proceedings in Physics 154, Proceedings of InterM (International Multidisciplinary Microscopy Congress), Antalya, Turkey, 10.10.2013, pp. 201-205, 2014 (BiBTeX, Who cited this?) Schöll, Simon; Mualla, Firas; Sommerfeldt, Björn; Steidl, Stefan; Maier, Andreas Image Preprocessing Pipeline for Bright-Field Miniature Live Cell Microscopy Prototypes Springer Proceedings in Physics 154, Proceedings of InterM (International Multidisciplinary Microscopy Congress), Antalya, Turkey, 10.10.2013, pp. 261-267, 2014 (BiBTeX, Who cited this?) Mualla, Firas; Schöll, Simon; Sommerfeldt, Björn; Maier, Andreas; Steidl, Stefan; Buchholz, Rainer; Hornegger, Joachim Unsupervised Unstained Cell Detection by SIFT Keypoint Clustering and Self-labeling Algorithm Lecture Notes in Computer Science, Volume 8675, MICCAI 2014 Proceedings, Part III (Medical Image Computing and Computer-Assisted Intervention – MICCAI 2014), Boston, MA, USA, 14.09.2014, pp. 377-384, 2014 (BiBTeX, Who cited this?) Talks Mualla, Firas Improving Joint Learning of Suspended and Adherent Cell Detection Using Low-Pass Monogenic Phase and Transport of Intensity Equation (Talk) at ISBI (IEEE 11th International Symposium on Biomedical Imaging) in Beijing, China (01.05) 2013 (11 Publications, Talks and Patents) Journal Articles Mualla, Firas; Schöll, Simon; Sommerfeldt, Björn; Maier, Andreas; Hornegger, Joachim Automatic Cell Detection in Bright-Field Microscope Images Using SIFT, Random Forests, and Hierarchical Clustering IEEE Transactions on Medical Imaging, vol. 32, no. 12, pp. 2274-2286, 2013 (BiBTeX, Who cited this?) Articles in Conference Proceedings Mualla, Firas; Schöll, Simon; Sommerfeldt, Björn; Hornegger, Joachim Using the Monogenic Signal for Cell-Background Classification in Bright-Field Microscope Images Proceedings des Workshops Bildverarbeitung für die Medizin 2013 (Bildverarbeitung für die Medizin 2013), Heidelberg, 03.03.2013, pp. 170-174, 2013 (BiBTeX, Who cited this?) Talks Mualla, Firas Application of Supervised Cell Detection on Multiple Channels of the COSIR Prototype (Talk) at PreSens GmbH (COSIR project meeting) in Regensburg (02.12) Mualla, Firas Using the Monogenic Signal for Cell-Background Classification in Bright-Field Microscope Images (Talk) at Abteilung Medizinische und Biologische Informatik Deutsches Krebsforschungszentrum, Heidelberg (Bildverarbeitung für die Medizin 2013) in Heidelberg (05.03) Mualla, Firas About Density Estimation, Detection, and Vitality (Talk) at Institute of Bioprocess Engineering (COSIR workshop) in Erlangen (20.02) Mualla, Firas Evaluation of Three Cell Detection Algorithms on Standard Bright-Field Microscope Images and Cell Density Estimation on COSIR-Prototype Images (Talk) at PreSens GmbH (COSIR project meeting) in Regensburg (05.07) Mualla, Firas Improving Cell Detection Accuracy Using Agglomerative Hierarchical Clustering (Talk) at Siemens AG (LME-Siemens meeting) in Munich (06.06) Sembritzki, Klaus; Mualla, Firas; Petrovic, Aleksandar; Maier, Andreas; Schmidt, Sebastian; Heismann, Björn; Hornegger, Joachim; Kornhuber, Johannes Skull-stripping Free Preprocessing Pipeline for Functional Magnetic Resonance Imaging (Talk) at Organization for Human Brain Mapping (19th Annual Meeting of the Organization for Human Brain Mapping) in Seattle, WA, USA (18.06.) Mualla, Firas; Schöll, Simon; Bohr, Christopher; Neumann, Helmut; Maier, Andreas Epithelial Cell Detection in Endomicroscopy Images of the Vocal Folds (Talk) (International Multidisciplinary Microscopy Congress) in Antalya, Turkey (11.10) Schöll, Simon; Mualla, Firas Image Analysis Methods for Monitoring of Cell Cultures (Talk) at Institute of Clinical Microbiology, Immunology and Hygiene (Kick-Off Symposium Optical Imaging Center Erlangen (OICE)) in Erlangen (23.08) Schöll, Simon; Mualla, Firas Image Preprocessing Pipeline for Bright-Field Miniature Live Cell Microscopy Prototypes (Talk) at Limak Limra International Hotels (International Multidisciplinary Microscopy Congress) in Antalya, Turkey (11.10) 2012 (3 Publications, Talks and Patents) Journal Articles Mualla, Firas; Prümmer, Marcus; Hahn, Dieter; Hornegger, Joachim Toward Automatic Detection of Vessel Stenoses in Cerebral 3D DSA Volumes Physics in Medicine and Biology, vol. 57, no. 9, pp. 2555-2573, 2012 (BiBTeX, Who cited this?) Talks Mualla, Firas Cell Density Estimation and Cell Detection (Talk) at Pattern Recognition Lab (COSIR project meeting) in Erlangen (18.09) Mualla, Firas Learning-Based Cell Detection with Evaluation on Simulated Images (Talk) at ASTRUM IT GmbH (COSIR project meeting) in Erlangen (17.04) 2011 (2 Publications, Talks and Patents) Talks Mualla, Firas Cell Counting by Learning Intensity Profiles (Talk) at Institute of Bioprocess Engineering (COSIR project meeting) in Erlangen (18.10) Mualla, Firas Vessel Diseases Detection in 3D Digital Subtraction Angiography Images (Talk) at Siemens AG, Imaging & Therapy Division (feasibility study) in Forchheim (04.05)