edu.stanford.rsl.science
Class RowWeightingTool

java.lang.Object
  extended by edu.stanford.rsl.konrad.filtering.ImageFilteringTool
      extended by edu.stanford.rsl.konrad.filtering.IndividualImageFilteringTool
          extended by edu.stanford.rsl.science.RowWeightingTool
All Implemented Interfaces:
Citeable, GUIConfigurable, SafeSerializable, NamedParallelizableRunnable, ParallelizableRunnable, java.io.Serializable, java.lang.Cloneable, java.lang.Runnable
Direct Known Subclasses:
AdditiveRowWeightingTool

public class RowWeightingTool
extends IndividualImageFilteringTool

Filtering tool to apply row weights.

Author:
Andreas Maier
See Also:
Serialized Form

Constructor Summary
RowWeightingTool()
           
 
Method Summary
 ij.process.ImageProcessor applyToolToProcessor(ij.process.ImageProcessor imageProcessor)
          Is called in every thread to apply the tool to an individual ImageProcessor
 IndividualImageFilteringTool clone()
          All ImageFilteringTools need to be Cloneable in order to enable multiple processor usage.
 void configure()
          Configures the object before execution
 java.lang.String getBibtexCitation()
          Returns the citation in bibTex format
 java.lang.String getMedlineCitation()
          Returns the citation in Medline format
 double[] getStats()
           
 java.lang.String getToolName()
          returns the name of the actual tool which was used.
 java.lang.Object[] getWeights()
           
 boolean isDeviceDependent()
          returns true, if the filter models or compensates device dependent, i.e.
 void readAdjustmentInformationFromFile(java.lang.String filename)
          Reads the row weight data from a file
 void setConfiguration(Configuration config)
           
 void setStats(double[] stats)
           
 void setWeights(java.lang.Object[] weights)
           
 
Methods inherited from class edu.stanford.rsl.konrad.filtering.IndividualImageFilteringTool
applyToolToProcessor, getFilteredImageProcessor, getImageIndex, getProcessName, prepareForSerialization, run, setImageIndex, setImageProcessor, setLatch
 
Methods inherited from class edu.stanford.rsl.konrad.filtering.ImageFilteringTool
getFilterTools, isConfigured, setConfigured, toString
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Constructor Detail

RowWeightingTool

public RowWeightingTool()
Method Detail

setConfiguration

public void setConfiguration(Configuration config)

setWeights

public void setWeights(java.lang.Object[] weights)

getWeights

public java.lang.Object[] getWeights()

setStats

public void setStats(double[] stats)

getStats

public double[] getStats()

clone

public IndividualImageFilteringTool clone()
Description copied from class: IndividualImageFilteringTool
All ImageFilteringTools need to be Cloneable in order to enable multiple processor usage.

Specified by:
clone in class IndividualImageFilteringTool

getToolName

public java.lang.String getToolName()
Description copied from class: ImageFilteringTool
returns the name of the actual tool which was used.

Specified by:
getToolName in class ImageFilteringTool
Returns:
the name of the tool as string.

readAdjustmentInformationFromFile

public void readAdjustmentInformationFromFile(java.lang.String filename)
                                       throws java.io.IOException
Reads the row weight data from a file

Parameters:
filename - the filename
Throws:
java.io.IOException - may occur

applyToolToProcessor

public ij.process.ImageProcessor applyToolToProcessor(ij.process.ImageProcessor imageProcessor)
Description copied from class: IndividualImageFilteringTool
Is called in every thread to apply the tool to an individual ImageProcessor

Specified by:
applyToolToProcessor in class IndividualImageFilteringTool
Parameters:
imageProcessor - the ImageProcessor
Returns:
the filtered instance of the ImageProcessor

configure

public void configure()
               throws java.lang.Exception
Description copied from interface: GUIConfigurable
Configures the object before execution

Throws:
java.lang.Exception - may happen

isDeviceDependent

public boolean isDeviceDependent()
Description copied from class: ImageFilteringTool
returns true, if the filter models or compensates device dependent, i.e. physical characteristics.

Specified by:
isDeviceDependent in class ImageFilteringTool
Returns:
true if the method is device dependent.

getBibtexCitation

public java.lang.String getBibtexCitation()
Description copied from interface: Citeable
Returns the citation in bibTex format

Returns:
citation as String

getMedlineCitation

public java.lang.String getMedlineCitation()
Description copied from interface: Citeable
Returns the citation in Medline format

Returns:
citation as String