Package | Description |
---|---|
edu.stanford.rsl.apps |
This package contains all applications that are delivered with CONRAD.
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edu.stanford.rsl.apps.gui |
Contains classes for the graphical user interface of CONRAD.
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edu.stanford.rsl.apps.gui.blobdetection | |
edu.stanford.rsl.conrad.cuda |
Contains classes for hardware-accelerated projection and volume handling using CUDA.
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edu.stanford.rsl.conrad.filtering |
Contains classes for filtering of image data.
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edu.stanford.rsl.conrad.filtering.multiprojection |
Contains classes for filtering of image data accessing multiple images at a time.
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edu.stanford.rsl.conrad.filtering.multiprojection.anisotropic |
Contains classes for anisotropic filtering of image data.
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edu.stanford.rsl.conrad.filtering.redundancy |
Contains classes for redundancy weighting of image data for filtered backprojection.
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edu.stanford.rsl.conrad.opencl |
Contains classes to use OpenCL.
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edu.stanford.rsl.conrad.pipeline |
Contains classes to enable pipeline processing.
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edu.stanford.rsl.conrad.reconstruction |
Contains classes to implement different reconstruction algorithms.
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edu.stanford.rsl.conrad.reconstruction.iterative |
Contains classes to implement different iterative reconstruction algorithms.
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edu.stanford.rsl.conrad.utils |
Contains various utility classes.
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edu.stanford.rsl.tutorial.motionEstimation |
This package contains a motion estimator.
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Modifier and Type | Class and Description |
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class |
TestJang
Generate random integers in a certain range.
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Constructor and Description |
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GUICompatibleObjectVisualizationPanel(ImageFilteringTool tool) |
Modifier and Type | Method and Description |
---|---|
static Grid3D |
AutomaticMarkerDetectionWorker.doParallelStuff(Grid3D inputStack,
ImageFilteringTool[] filters) |
Modifier and Type | Class and Description |
---|---|
class |
CUDABackProjector |
class |
CUDACompensatedBackProjector
This is the existing CUDABackProjector with added motion compensation.
|
Modifier and Type | Class and Description |
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class |
AbsoluteValueTool |
class |
ApplyHounsfieldScaling
This Class can be used to apply a previously learned Hounsfield scaling to an existing
reconstruction.
|
class |
ApplyLambdaWeightingTool
This class applies the beam hardening correction after Joseph & Spittal in projection domain.
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class |
AtractResidual2D
Filters all projections of a stack with the 2D residual kernel of the ATRACT reconstruction
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class |
BilateralFilteringTool |
class |
CosineWeightingTool
Filtering tool to apply cosine weights.
|
class |
DynamicDensityOptimizationScatterCorrectionTool |
class |
ExtremeValueTruncationFilter
This filter thresholds the values in imageProcessors.
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class |
FastRadialSymmetryTool
Tool to apply a Fast Radial Symmetry Transform on slices
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class |
FiducialMarkerDetectionTool |
class |
Filtering2DTool
Filtering tool to apply a 2D filter.
|
class |
HilbertFilteringTool
Tool to apply a 1-D Hilbert filter.
|
class |
HorizontalFlippingTool |
class |
HoughFilteringTool
Tool to apply a Hough filter for circles with fixed dimension.
|
class |
ImageConstantMathFilter |
class |
ImageJParallelTool
Filtering tool to apply an arbitrary ImageJ operation in parallel.
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class |
ImageMathFilter |
class |
IndividualImageFilteringTool |
class |
KinectBasedDetectorSaturationCorrectionTool |
class |
LaplaceFilteringTool |
class |
LogPoissonNoiseFilteringTool
Applies Poisson noise to the input image as it would happen in the physical process (based on a monochromatic x-ray source).
|
class |
MeanFilteringTool |
class |
MeanMarkerBasedProjectionShiftingTool |
class |
MeanMarkerBasedProjectionShiftingToolForXCAT |
class |
MedianFilteringTool
Implements a simple median filter based on sorting of all values in the kernel.
|
class |
NonLinearGainCorrectionTool |
class |
NumericalDerivativeComputationTool
Tool to compute first derivate numerically.
|
class |
NumericalLinewiseAntiderivativeFilteringTool
Tool to compute the antiderivative of the projection line-wise.
|
class |
PoissonNoiseFilteringTool
Applies Poisson noise to the input image.
|
class |
PrimaryModulationScatterCorrectionTool |
class |
RampFilteringTool
Class to apply a ramp filter to an image before 3D reconstruction.
|
class |
Rotate90DegreeLeftTool |
class |
ThinPlateSplinesBasedProjectionWarpingTool |
class |
ThinPlateSplinesBasedProjectionWarpingToolForXCAT |
class |
TruncationCorrectionTool
Class implements a simple truncation correction algorithm after
Ohnesorge, Flohr, Schwarz, Heiken, and Bae
"Efficient correction for CT image artifacts caused by objects extending outside the scan field of view"
Med.
|
class |
VolumeAttenuationFactorCorrectionTool
This Class implements the first step of the beam hardening correction after Joseph & Spittal.
|
Modifier and Type | Method and Description |
---|---|
ImageFilteringTool |
PrimaryModulationScatterCorrectionTool.clone() |
abstract ImageFilteringTool |
ImageFilteringTool.clone()
Creates a clone of the filter with the same configuration as the original.
|
static ImageFilteringTool[] |
ImageFilteringTool.getFilterTools()
Gives an Array with default instances of all known image filters.
|
Modifier and Type | Class and Description |
---|---|
class |
BilateralFilter3D |
class |
BlockWiseMultiProjectionFilter
Class for simplified parallelization of MultiProjectionFilters.
|
class |
BlockWiseStructureTensor |
class |
DiaphragmTrackingTool
This tool can be used to track a diaphragm in the projection data.
|
class |
IdentityTransformFilter
Class to test the BlockWiseMultiProjectionFilter.
|
class |
IterativeReconstructionFilter |
class |
Lambda3DDerivativeFilter
Class for the computation of a derivative along the source trajectory.
|
class |
MultiProjectionFilter
Abstract class to handle multi projection filter.
|
class |
ProjectionSortingFilter |
class |
Triangulation
This class triangulates the 3D position from subsequent projections.
|
Modifier and Type | Method and Description |
---|---|
ImageFilteringTool |
Triangulation.clone() |
ImageFilteringTool |
ProjectionSortingFilter.clone() |
ImageFilteringTool |
Lambda3DDerivativeFilter.clone() |
ImageFilteringTool |
IterativeReconstructionFilter.clone() |
ImageFilteringTool |
IdentityTransformFilter.clone() |
ImageFilteringTool |
DiaphragmTrackingTool.clone() |
ImageFilteringTool |
BlockWiseStructureTensor.clone() |
ImageFilteringTool |
BilateralFilter3D.clone() |
Modifier and Type | Class and Description |
---|---|
class |
AnisotropicStructureTensorNoiseFilter
MultiProjectionFilter which implements an anisotropic structure tensor noise filter.
|
class |
CUDAAnisotropicStructureTensorNoiseFilter
MultiProjectionFilter which implements an anisotropic structure tensor noise filter on CUDA.
|
class |
CUDAFFTAnisotropicStructureTensorNoiseFilter
MultiProjectionFilter which implements an anisotropic structure tensor noise filter.
|
Modifier and Type | Method and Description |
---|---|
ImageFilteringTool |
AnisotropicStructureTensorNoiseFilter.clone() |
Modifier and Type | Class and Description |
---|---|
class |
NooWeightingTool |
class |
OSCARWeightingTool |
class |
ParkerWeightingTool
Implementation of Parker weights.
|
class |
SilverWeightingTool |
class |
TrajectoryParkerWeightingTool
This version of the Parker weights computes the primary angles from the trajectory rather than from preconfigured "primaryAngles".
|
class |
WesargWeightingTool |
Modifier and Type | Class and Description |
---|---|
class |
OpenCLBackProjector |
Modifier and Type | Class and Description |
---|---|
class |
IndividualImagePipelineFilteringTool
Class to describe the thread which runs in a parallel image pipeline.
|
Modifier and Type | Method and Description |
---|---|
ImageFilteringTool[] |
IndividualImagePipelineFilteringTool.getPipeline() |
static ImageFilteringTool[] |
ParallelImageFilterPipeliner.getPipelineClone(ImageFilteringTool[] tools) |
Modifier and Type | Method and Description |
---|---|
static ImageFilteringTool[] |
ParallelImageFilterPipeliner.getPipelineClone(ImageFilteringTool[] tools) |
static IndividualImageFilteringTool[] |
ParallelImageFilterPipeliner.getSubPipeline(ImageFilteringTool[] tools,
int start,
int end) |
Constructor and Description |
---|
ParallelImageFilterPipeliner(ProjectionSource image,
ImageFilteringTool[] tools,
BufferedProjectionSink sink)
Constructor requires an ImagePlus.
|
Modifier and Type | Class and Description |
---|---|
class |
CPUSuperShortScanBackprojector
Implementation of the backprojector which is required for Noo's super-short-scan reconstruction.
|
class |
DistanceDrivenBasedReconstruction |
class |
FBPReconstructionFilter
The FBP reconstruction filter is the abstract class that describes a general outline for a
filtered backprojection algorithm.
|
class |
IterativeReconstruction
All iterative reconstruction algorithms are based on the iterative reconstruction filter
The iterative reconstruction is the abstract class that describe a general outline for a
iterative reconstruction algorithm.
|
class |
LolaBunnyBackprojector
The most simple implementation of the backprojection using no speed-up methods.
|
class |
ModelBasedIterativeReconstruction |
class |
MotionCompensatedSubVolumeBackprojector
This FBP-based mathod splits the reconstruction volume into sub volumes which can be processed in parallel to speed up the reconstruction further.
|
class |
MotionCompensatedVOIBasedReconstructionFilter
The VOIBasedReconstructionFilter is an implementation of the backprojection which employs a volume-of-interest (VOI) to
speed up reconstruction.
|
class |
RayDrivenBasedReconstruction |
class |
RayWeightCorrectingCPUSuperShortScanBackprojector
A FBP-based reconstruction algorithm which evaluates whether 180 degrees of angular coverage have been achieved during the reconstruction.
|
class |
ReconstructionFilter
All reconstruction algorithms are based on the reconstruction filter.
|
class |
RigidBody3DTransformationVOIBasedReconstructionFilter
The VOIBasedReconstructionFilter is an implementation of the backprojection which employs a volume-of-interest (VOI) to
speed up reconstruction.
|
class |
RigidBody3DTransformationVOIBasedReconstructionFilterForXCAT
The VOIBasedReconstructionFilter is an implementation of the backprojection which employs a volume-of-interest (VOI) to
speed up reconstruction.
|
class |
SeparableFootprintsBasedReconstruction |
class |
SimpleIterativeReconstruction
A simple approach for iterative reconstruction.
|
class |
SubVolumeBackprojector
This FBP-based mathod splits the reconstruction volume into sub volumes which can be processed in parallel to speed up the reconstruction further.
|
class |
SuperShortScanBackprojection
Deprecated.
|
class |
VOIBasedReconstructionFilter
The VOIBasedReconstructionFilter is an implementation of the backprojection which employs a volume-of-interest (VOI) to
speed up reconstruction.
|
Modifier and Type | Method and Description |
---|---|
ImageFilteringTool |
VOIBasedReconstructionFilter.clone() |
ImageFilteringTool |
SimpleIterativeReconstruction.clone() |
ImageFilteringTool |
ModelBasedIterativeReconstruction.clone() |
ImageFilteringTool |
IterativeReconstruction.clone() |
ImageFilteringTool |
FBPReconstructionFilter.clone() |
Modifier and Type | Class and Description |
---|---|
class |
LeastSquaresCG |
class |
PenalizedLeastSquareART |
Modifier and Type | Method and Description |
---|---|
ImageFilteringTool |
ModelBasedIterativeReconstruction.clone() |
ImageFilteringTool |
IterativeReconstruction.clone() |
Modifier and Type | Method and Description |
---|---|
ImageFilteringTool[] |
Configuration.getFilterPipeline() |
Modifier and Type | Method and Description |
---|---|
static Grid3D |
ImageUtil.applyFilterInParallel(Grid3D inputStack,
ImageFilteringTool filter) |
static Grid3D |
ImageUtil.applyFiltersInParallel(Grid3D inputStack,
ImageFilteringTool[] filters) |
void |
Configuration.setFilterPipeline(ImageFilteringTool[] pipline) |
Modifier and Type | Class and Description |
---|---|
class |
OpenCLCompensatedBackProjector
DO NOT USE IN LARGEVOLUMEMODE
|
class |
OpenCLCompensatedBackProjector1DCompressionField
DO NOT USE IN LARGEVOLUMEMODE
|
class |
OpenCLCompensatedBackProjectorTPS
DO NOT USE IN LARGEVOLUMEMODE
|