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java.lang.Objectij.ImagePlus
edu.stanford.rsl.konrad.io.Nrrd_Reader
public class Nrrd_Reader
ImageJ plugin to read a file in Gordon Kindlmann's NRRD or 'nearly raw raster data' format, a simple format which handles coordinate systems and data types in a very general way. See http://teem.sourceforge.net/nrrd and http://flybrain.stanford.edu/nrrd
Field Summary | |
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java.lang.String |
headerPath
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java.lang.String |
imageName
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java.lang.String |
imagePath
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java.lang.String |
int16Types
|
java.lang.String |
int32Types
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java.lang.String |
uint16Types
|
java.lang.String |
uint32Types
|
java.lang.String |
uint8Types
|
Fields inherited from class ij.ImagePlus |
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changes, COLOR_256, COLOR_RGB, GRAY16, GRAY32, GRAY8 |
Fields inherited from interface java.awt.image.ImageObserver |
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ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH |
Fields inherited from interface ij.measure.Measurements |
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AREA, AREA_FRACTION, CENTER_OF_MASS, CENTROID, CIRCULARITY, ELLIPSE, FERET, INTEGRATED_DENSITY, INVERT_Y, KURTOSIS, LABELS, LIMIT, MAX_STANDARDS, MEAN, MEDIAN, MIN_MAX, MODE, PERIMETER, RECT, SCIENTIFIC_NOTATION, SHAPE_DESCRIPTORS, SKEWNESS, SLICE, STACK_POSITION, STD_DEV |
Constructor Summary | |
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Nrrd_Reader()
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Method Summary | |
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NrrdFileInfo |
getHeaderInfo(java.lang.String directory,
java.lang.String fileName)
|
ij.ImagePlus |
load(java.lang.String directory,
java.lang.String fileName)
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void |
run(java.lang.String arg)
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Methods inherited from class ij.ImagePlus |
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addImageListener, close, convertIndexToPosition, copy, copyScale, createEmptyStack, createHyperStack, createImagePlus, createLut, createNewRoi, draw, draw, flatten, flush, getBitDepth, getBufferedImage, getBytesPerPixel, getCalibration, getCanvas, getChannel, getChannelProcessor, getClipboard, getCurrentSlice, getDefault16bitRange, getDimensions, getDisplayRangeMax, getDisplayRangeMin, getFileInfo, getFrame, getGlobalCalibration, getHeight, getHideOverlay, getID, getImage, getImageStack, getImageStackSize, getLocalCalibration, getLocationAsString, getLuts, getMask, getNChannels, getNDimensions, getNFrames, getNSlices, getOpenAsHyperStack, getOriginalFileInfo, getOverlay, getPixel, getProcessor, getProperties, getProperty, getRoi, getShortTitle, getSlice, getStack, getStackIndex, getStackSize, getStartTime, getStatistics, getStatistics, getStatistics, getStatistics, getTitle, getType, getWidth, getWindow, hide, imageUpdate, isComposite, isDisplayedHyperStack, isHyperStack, isInvertedLut, isLocked, isProcessor, isVisible, killRoi, killStack, lock, lockSilently, mouseMoved, paste, removeImageListener, repaintWindow, resetClipboard, resetDisplayRange, resetStack, restoreRoi, revert, saveRoi, setActivated, setCalibration, setColor, setDefault16bitRange, setDimensions, setDisplayRange, setDisplayRange, setFileInfo, setGlobalCalibration, setHideOverlay, setIgnoreFlush, setImage, setOpenAsHyperStack, setOverlay, setOverlay, setOverlay, setPosition, setPosition, setPositionWithoutUpdate, setProcessor, setProcessor, setProperty, setRoi, setRoi, setRoi, setRoi, setSlice, setSliceWithoutUpdate, setStack, setStack, setStack, setTitle, setWindow, show, show, startTiming, toString, trimProcessor, unlock, updateAndDraw, updateAndRepaintWindow, updateChannelAndDraw, updateImage, updatePosition, updateStatusbarValue |
Methods inherited from class java.lang.Object |
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equals, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Field Detail |
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public final java.lang.String uint8Types
public final java.lang.String int16Types
public final java.lang.String uint16Types
public final java.lang.String int32Types
public final java.lang.String uint32Types
public java.lang.String headerPath
public java.lang.String imagePath
public java.lang.String imageName
Constructor Detail |
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public Nrrd_Reader()
Method Detail |
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public void run(java.lang.String arg)
run
in interface ij.plugin.PlugIn
public ij.ImagePlus load(java.lang.String directory, java.lang.String fileName)
public NrrdFileInfo getHeaderInfo(java.lang.String directory, java.lang.String fileName) throws java.io.IOException
java.io.IOException
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